RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 AGMATQ9BSE5 352 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 PARP12Q9H0J9 701 aaKnown RBP11.3□□□□□ -0.6
C9orf3-221ENST00000489562 ZNF221Q9UK13 617 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 GAB2Q9UQC2 676 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 NAV3Q8IVL0 2385 aa11.3□□□□□ -0.6
C9orf3-221ENST00000489562 OOSP1A8MZH6 123 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 RAB29O14966 203 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 NPFFO15130 113 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 SLC31A2O15432 143 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 ST8SIA5O15466 376 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 PLA2G10O15496 165 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 OR8U9P0C7N5 309 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 ZNF137PP52743 207 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 UCP3P55916 312 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 SURF2Q15527 256 aaPredicted RBP11.29□□□□□ -0.6
C9orf3-221ENST00000489562 SCGB2B2Q4G0G5 96 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 PLA1AQ53H76 456 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 KLF17Q5JT82 389 aaPredicted RBP11.29□□□□□ -0.6
C9orf3-221ENST00000489562 FAM120AOSQ5T036 256 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 UTF1Q5T230 341 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 FAM71F2Q6NXP2 309 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 LYG1Q8N1E2 194 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 OR4P4Q8NGL7 312 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 OR8U1Q8NH10 309 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 SCGB3A2Q96PL1 93 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 IFI27L2Q9H2X8 130 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 DPM3Q9P2X0 92 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 NUP50Q9UKX7 468 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 HIVEP2P31629 2446 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 HIVEP1P15822 2718 aa11.29□□□□□ -0.6
C9orf3-221ENST00000489562 CELSR1Q9NYQ6 3014 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 IGKV1D-13A0A0B4J2D9 117 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 LINC00854A0A1B0GVQ3 168 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 A0A1W2PPE3 182 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 OR5H14A6NHG9 310 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 LEUTXA8MZ59 168 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 BUB1B-PAK6H3BSN5 160 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 TXNL1O43396 289 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 IGHV4-38-2P0DP08 117 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 IGKV1-13P0DP09 117 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 GPR12P47775 334 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 FXYD4P59646 89 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 IFITM3Q01628 133 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 PRB3Q04118 309 aaPredicted RBP11.28□□□□□ -0.6
C9orf3-221ENST00000489562 SCGB2A2Q13296 93 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 AADACL3Q5VUY0 350 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 IDO2Q6ZQW0 420 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 PDZD9Q8IXQ8 264 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 ZNF645Q8N7E2 425 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 ZBTB34Q8NCN2 500 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 SECTM1Q8WVN6 248 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 AKR1E2Q96JD6 320 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 S1PR3Q99500 378 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 SMR3AQ99954 134 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 SLC25A21Q9BQT8 299 aaPredicted RBP11.28□□□□□ -0.6
C9orf3-221ENST00000489562 SLC5A7Q9GZV3 580 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 FXYD6Q9H0Q3 95 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 OR2D2Q9H210 308 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 TBC1D24Q9ULP9 559 aa11.28□□□□□ -0.6
C9orf3-221ENST00000489562 EPHA1P21709 976 aa11.27□□□□□ -0.61
C9orf3-221ENST00000489562 S100GP29377 79 aa11.27□□□□□ -0.61
C9orf3-221ENST00000489562 SAA4P35542 130 aa11.27□□□□□ -0.61
C9orf3-221ENST00000489562 ARHGDIBP52566 201 aa11.27□□□□□ -0.61
C9orf3-221ENST00000489562 RBMS2Q15434 407 aaKnown RBP11.27□□□□□ -0.61
C9orf3-221ENST00000489562 CCDC144NLQ6NUI1 221 aa11.27□□□□□ -0.61
C9orf3-221ENST00000489562 C9orf139Q6ZV77 190 aa11.27□□□□□ -0.61
C9orf3-221ENST00000489562 SLC38A6Q8IZM9 456 aa11.27□□□□□ -0.61
C9orf3-221ENST00000489562 ZFAND1Q8TCF1 268 aa11.27□□□□□ -0.61
C9orf3-221ENST00000489562 TOMM40LQ969M1 308 aa11.27□□□□□ -0.61
C9orf3-221ENST00000489562 ST6GALNAC6Q969X2 333 aa11.27□□□□□ -0.61
C9orf3-221ENST00000489562 RPEQ96AT9 228 aa11.27□□□□□ -0.61
C9orf3-221ENST00000489562 MALSU1Q96EH3 234 aa11.27□□□□□ -0.61
C9orf3-221ENST00000489562 ZNF486Q96H40 463 aaPredicted RBP11.27□□□□□ -0.61
C9orf3-221ENST00000489562 ABHD14BQ96IU4 210 aa11.27□□□□□ -0.61
C9orf3-221ENST00000489562 COPZ2Q9P299 210 aa11.27□□□□□ -0.61
C9orf3-221ENST00000489562 SONP18583 2426 aaKnown RBP11.27□□□□□ -0.61
C9orf3-221ENST00000489562 SAA2-SAA4A0A096LPE2 208 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 A0A1W2PRD5 423 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 A0A1W2PRF3 423 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 A0A1W2PRM7 423 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 LY6LH3BQJ8 138 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 HSD17B6O14756 317 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 SAA2P0DJI9 122 aaPredicted RBP11.26□□□□□ -0.61
C9orf3-221ENST00000489562 PGAM2P15259 253 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 SRP14P37108 136 aaKnown RBP11.26□□□□□ -0.61
C9orf3-221ENST00000489562 ZNF816Q0VGE8 651 aaPredicted RBP11.26□□□□□ -0.61
C9orf3-221ENST00000489562 TPTE2P1Q5T6R2 138 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 ZNF833PQ6ZTB9 187 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 LDLRAD3Q86YD5 345 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 ODF3L1Q8IXM7 274 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 CMTM1Q8IZ96 169 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 PIP4P2Q8N4L2 257 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 POC5Q8NA72 575 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 OR13C8Q8NGS7 320 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 MS4A7Q9GZW8 240 aaPredicted RBP11.26□□□□□ -0.61
C9orf3-221ENST00000489562 DPAGT1Q9H3H5 408 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 CDC42EP3Q9UKI2 254 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 RNF150Q9ULK6 438 aa11.26□□□□□ -0.61
C9orf3-221ENST00000489562 IGHV3OR16-10A0A075B7F0 116 aa11.25□□□□□ -0.61
C9orf3-221ENST00000489562 FAM240BA0A1B0GVZ2 78 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms