RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 SMCO1Q147U7 214 aa10.17□□□□□ -0.78
HDAC6-230ENST00000488543 ITLN1Q8WWA0 313 aa10.17□□□□□ -0.78
HDAC6-230ENST00000488543 C14orf79Q96F83 325 aa10.17□□□□□ -0.78
HDAC6-230ENST00000488543 KIRREL1Q96J84 757 aa10.17□□□□□ -0.78
HDAC6-230ENST00000488543 C12orf57Q99622 126 aa10.17□□□□□ -0.78
HDAC6-230ENST00000488543 CABLES2Q9BTV7 478 aa10.17□□□□□ -0.78
HDAC6-230ENST00000488543 METRNQ9UJH8 293 aa10.17□□□□□ -0.78
HDAC6-230ENST00000488543 ZNF98A6NK75 572 aa10.17□□□□□ -0.78
HDAC6-230ENST00000488543 SRRM5B3KS81 715 aa10.17□□□□□ -0.78
HDAC6-230ENST00000488543 IFNA21P01568 189 aa10.17□□□□□ -0.78
HDAC6-230ENST00000488543 NAA60Q9H7X0 242 aa10.17□□□□□ -0.78
HDAC6-230ENST00000488543 SLC2A9Q9NRM0 540 aa10.17□□□□□ -0.78
HDAC6-230ENST00000488543 WIPI2Q9Y4P8 454 aa10.17□□□□□ -0.78
HDAC6-230ENST00000488543 DEFB108AA8MXU0 73 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 PHF1O43189 567 aaPredicted RBP10.16□□□□□ -0.78
HDAC6-230ENST00000488543 IGHV1-46P01743 117 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 CD5P06127 495 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 SNRNP70P08621 437 aaKnown RBP10.16□□□□□ -0.78
HDAC6-230ENST00000488543 HERV-K104P61576 105 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 SMIM21Q3B7S5 101 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 MOB1BQ7L9L4 216 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 MOGAT3Q86VF5 341 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 CD177Q8N6Q3 437 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 SAT2Q96F10 170 aaPredicted RBP10.16□□□□□ -0.78
HDAC6-230ENST00000488543 TP53RKQ96S44 253 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 MBNL3Q9NUK0 354 aaKnown RBP10.16□□□□□ -0.78
HDAC6-230ENST00000488543 IGKV1D-13A0A0B4J2D9 117 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 COLCA2A8K830 154 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 TK1P04183 234 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 CD3EP07766 207 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 CTXN2P0C2S0 81 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 IGKV1-13P0DP09 117 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 OMGP23515 440 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 GATA4P43694 442 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 OR3A1P47881 315 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 PEA15Q15121 130 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 DOPEY1Q5JWR5 2465 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 AVPI1Q5T686 147 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 ZNF808Q8N4W9 903 aaPredicted RBP10.16□□□□□ -0.78
HDAC6-230ENST00000488543 GCSAMQ8N6F7 178 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 GLYATL2Q8WU03 294 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 ABHD14AQ9BUJ0 271 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 MAGT1Q9H0U3 335 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 RPS10P5Q9NQ39 176 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 FAM208BQ5VWN6 2430 aa10.16□□□□□ -0.78
HDAC6-230ENST00000488543 UBR5O95071 2799 aaPredicted RBP10.16□□□□□ -0.78
HDAC6-230ENST00000488543 TACC2O95359 2948 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 H7C1Q1 480 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 LHBP01229 141 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 COL10A1Q03692 680 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 CLINT1Q14677 625 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 COQ2Q96H96 371 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 CACFD1Q9UGQ2 172 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 FBXO7Q9Y3I1 522 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 KLF2Q9Y5W3 355 aaPredicted RBP10.15□□□□□ -0.78
HDAC6-230ENST00000488543 DOCK11Q5JSL3 2073 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 A0A1W2PPE3 182 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 NPIPB11E5RHQ5 1161 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 IFNL4K9M1U5 179 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 TSPAN15O95858 294 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 PSG2P11465 335 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 LOXP28300 417 aaPredicted RBP10.15□□□□□ -0.78
HDAC6-230ENST00000488543 GNRHRP30968 328 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 PPP1CCP36873 323 aaKnown RBP10.15□□□□□ -0.78
HDAC6-230ENST00000488543 SELENOVP59797 346 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 SNRPEP62304 92 aaKnown RBP10.15□□□□□ -0.78
HDAC6-230ENST00000488543 HABP2Q14520 560 aaPredicted RBP10.15□□□□□ -0.78
HDAC6-230ENST00000488543 HMGN3Q15651 99 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 TMEM182Q6ZP80 229 aaPredicted RBP10.15□□□□□ -0.78
HDAC6-230ENST00000488543 TGIF2LYQ8IUE0 185 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 H1FOOQ8IZA3 346 aaPredicted RBP10.15□□□□□ -0.78
HDAC6-230ENST00000488543 SLC35G3Q8N808 338 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 EIF5A2Q9GZV4 153 aaKnown RBP10.15□□□□□ -0.78
HDAC6-230ENST00000488543 CISD1Q9NZ45 108 aaKnown RBP10.15□□□□□ -0.78
HDAC6-230ENST00000488543 LRRK2Q5S007 2527 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 AKAP6Q13023 2319 aa10.15□□□□□ -0.78
HDAC6-230ENST00000488543 IGKV1D-17A0A075B6S4 117 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 A0A1W2PPH5 198 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 TMEM30CPA0ZSE6 113 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 TAAR5O14804 337 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 PRH1P02810 166 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 CAMLGP49069 296 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 TNFAIP6P98066 277 aaPredicted RBP10.14□□□□□ -0.79
HDAC6-230ENST00000488543 AWAT1Q58HT5 328 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 SLC35E4Q6ICL7 350 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 RBMS3Q6XE24 437 aaKnown RBP10.14□□□□□ -0.79
HDAC6-230ENST00000488543 FAM90A1Q86YD7 464 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 GALNT14Q96FL9 552 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 SEBOXQ9HB31 216 aaPredicted RBP10.14□□□□□ -0.79
HDAC6-230ENST00000488543 PARP11Q9NR21 331 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 OR1A1Q9P1Q5 309 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 TRAPPC2LQ9UL33 140 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 hCG_1809904A0A1W2PP81 198 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 A0A1W2PR64 198 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 A0A1W2PRV1 198 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 FAM24AA6NFZ4 105 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 M0R036 132 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 ZNF737O75373 536 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 JTBO76095 146 aa10.14□□□□□ -0.79
HDAC6-230ENST00000488543 ARG1P05089 322 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms