RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 ZNF645Q8N7E2 425 aa11.73□□□□□ -0.53
CUX1-209ENST00000487284 ZBTB34Q8NCN2 500 aa11.73□□□□□ -0.53
CUX1-209ENST00000487284 RFESDQ8TAC1 157 aa11.73□□□□□ -0.53
CUX1-209ENST00000487284 CORO2AQ92828 525 aa11.73□□□□□ -0.53
CUX1-209ENST00000487284 HEXA-AS1Q9H8Q6 139 aa11.73□□□□□ -0.53
CUX1-209ENST00000487284 PAIP2BQ9ULR5 123 aaKnown RBP11.73□□□□□ -0.53
CUX1-209ENST00000487284 KCNS2Q9ULS6 477 aa11.73□□□□□ -0.53
CUX1-209ENST00000487284 TMED3Q9Y3Q3 217 aa11.73□□□□□ -0.53
CUX1-209ENST00000487284 RBM7Q9Y580 266 aaKnown RBP11.73□□□□□ -0.53
CUX1-209ENST00000487284 ASH1LQ9NR48 2969 aaKnown RBP11.72□□□□□ -0.53
CUX1-209ENST00000487284 TRGV10A0A0A0MS01 117 aa11.72□□□□□ -0.53
CUX1-209ENST00000487284 DUXBA0A1W2PPF3 345 aa11.72□□□□□ -0.53
CUX1-209ENST00000487284 MEX3AA1L020 520 aaKnown RBP11.72□□□□□ -0.53
CUX1-209ENST00000487284 C4BPBP20851 252 aa11.72□□□□□ -0.53
CUX1-209ENST00000487284 ATP5J2P56134 94 aa11.72□□□□□ -0.53
CUX1-209ENST00000487284 C17orf58Q2M2W7 97 aa11.72□□□□□ -0.53
CUX1-209ENST00000487284 TMEM268Q5VZI3 342 aa11.72□□□□□ -0.53
CUX1-209ENST00000487284 ZNF546Q86UE3 836 aa11.72□□□□□ -0.53
CUX1-209ENST00000487284 SLC35G3Q8N808 338 aa11.72□□□□□ -0.53
CUX1-209ENST00000487284 THAP6Q8TBB0 222 aa11.72□□□□□ -0.53
CUX1-209ENST00000487284 IL22RA2Q969J5 263 aa11.72□□□□□ -0.53
CUX1-209ENST00000487284 PERPQ96FX8 193 aa11.72□□□□□ -0.53
CUX1-209ENST00000487284 LINC00574Q9H8X3 128 aa11.72□□□□□ -0.53
CUX1-209ENST00000487284 CHODLQ9H9P2 273 aa11.72□□□□□ -0.53
CUX1-209ENST00000487284 KAAG1Q9UBP8 84 aa11.72□□□□□ -0.53
CUX1-209ENST00000487284 TNFSF18Q9UNG2 199 aa11.72□□□□□ -0.53
CUX1-209ENST00000487284 VPS13CQ709C8 3753 aa11.72□□□□□ -0.53
CUX1-209ENST00000487284 IGHV3-43A0A0B4J1X8 118 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 PIGBOS1A0A0B4J2F0 54 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 KBTBD11-OT1A0A1B0GTJ5 212 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 ZNF729A6NN14 1252 aaPredicted RBP11.71□□□□□ -0.53
CUX1-209ENST00000487284 TNFSF12O43508 249 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 NDUFA2O43678 99 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 YPEL1O60688 119 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 IGHV3-43DP0DP04 118 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 LYL1P12980 280 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 LOXL3P58215 753 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 ZNF345Q14585 488 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 TMEM30BQ3MIR4 351 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 AVPI1Q5T686 147 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 SELENOHQ8IZQ5 122 aaKnown RBP11.71□□□□□ -0.53
CUX1-209ENST00000487284 EDARADDQ8WWZ3 215 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 YPEL2Q96QA6 119 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 RNF126Q9BV68 326 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 OR2D2Q9H210 308 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 MBD2Q9UBB5 411 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 SLC25A10Q9UBX3 287 aaPredicted RBP11.71□□□□□ -0.53
CUX1-209ENST00000487284 CLN8Q9UBY8 286 aa11.71□□□□□ -0.53
CUX1-209ENST00000487284 RNF212BA8MTL3 300 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 PPIHO43447 177 aaKnown RBP11.71□□□□□ -0.54
CUX1-209ENST00000487284 ADAM20O43506 726 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 FCN3O75636 299 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 IGHV2-70P01814 119 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 PAX1P15863 534 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 S100A11P31949 105 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 MEF2CQ06413 473 aaPredicted RBP11.71□□□□□ -0.54
CUX1-209ENST00000487284 EIF4EBP1Q13541 118 aaPredicted RBP11.71□□□□□ -0.54
CUX1-209ENST00000487284 OPCMLQ14982 345 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 MORN2Q502X0 79 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 PRSS54Q6PEW0 395 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 TMUB2Q71RG4 321 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 ZNF695Q8IW36 515 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 FGFRL1Q8N441 504 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 OR51H1Q8NH63 302 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 RBPMSQ93062 196 aaKnown RBP11.71□□□□□ -0.54
CUX1-209ENST00000487284 C5orf30Q96GV9 206 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 AGMATQ9BSE5 352 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 GSX2Q9BZM3 304 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 MFFQ9GZY8 342 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 LIN7CQ9NUP9 197 aaKnown RBP11.71□□□□□ -0.54
CUX1-209ENST00000487284 LINC00312Q9Y6C7 94 aa11.71□□□□□ -0.54
CUX1-209ENST00000487284 PDZD2O15018 2839 aa11.7□□□□□ -0.54
CUX1-209ENST00000487284 hADV38S2A0JD32 116 aa11.7□□□□□ -0.54
CUX1-209ENST00000487284 H0YIZ8 118 aa11.7□□□□□ -0.54
CUX1-209ENST00000487284 ITGB1BP1O14713 200 aa11.7□□□□□ -0.54
CUX1-209ENST00000487284 PET100P0DJ07 73 aa11.7□□□□□ -0.54
CUX1-209ENST00000487284 TMEM33P57088 247 aa11.7□□□□□ -0.54
CUX1-209ENST00000487284 RAB32Q13637 225 aa11.7□□□□□ -0.54
CUX1-209ENST00000487284 ESCO2Q56NI9 601 aa11.7□□□□□ -0.54
CUX1-209ENST00000487284 LYPD2Q6UXB3 125 aa11.7□□□□□ -0.54
CUX1-209ENST00000487284 BARX1Q9HBU1 254 aaPredicted RBP11.7□□□□□ -0.54
CUX1-209ENST00000487284 TAS2R3Q9NYW6 316 aa11.7□□□□□ -0.54
CUX1-209ENST00000487284 GSKIPQ9P0R6 139 aa11.7□□□□□ -0.54
CUX1-209ENST00000487284 GNG12Q9UBI6 72 aa11.7□□□□□ -0.54
CUX1-209ENST00000487284 CTSZQ9UBR2 303 aa11.7□□□□□ -0.54
CUX1-209ENST00000487284 RNF222A6NCQ9 220 aa11.69□□□□□ -0.54
CUX1-209ENST00000487284 NDUFB3O43676 98 aa11.69□□□□□ -0.54
CUX1-209ENST00000487284 TSC22D2O75157 780 aa11.69□□□□□ -0.54
CUX1-209ENST00000487284 OR2F2O95006 317 aa11.69□□□□□ -0.54
CUX1-209ENST00000487284 NDUFB7P17568 137 aa11.69□□□□□ -0.54
CUX1-209ENST00000487284 OR2F1Q13607 317 aa11.69□□□□□ -0.54
CUX1-209ENST00000487284 LRRC10Q5BKY1 277 aa11.69□□□□□ -0.54
CUX1-209ENST00000487284 ACOT7LQ6ZUV0 252 aa11.69□□□□□ -0.54
CUX1-209ENST00000487284 KCNRGQ8N5I3 272 aa11.69□□□□□ -0.54
CUX1-209ENST00000487284 OR52M1Q8NGK5 317 aa11.69□□□□□ -0.54
CUX1-209ENST00000487284 RAB1CQ92928 201 aa11.69□□□□□ -0.54
CUX1-209ENST00000487284 TIMD4Q96H15 378 aa11.69□□□□□ -0.54
CUX1-209ENST00000487284 GFOD1Q9NXC2 390 aa11.69□□□□□ -0.54
CUX1-209ENST00000487284 LPAR3Q9UBY5 353 aa11.69□□□□□ -0.54
CUX1-209ENST00000487284 RNF150Q9ULK6 438 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms