RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 CXorf66Q5JRM2 361 aaPredicted RBP14.22□□□□□ -0.13
COL7A1-210ENST00000487017 PET117Q6UWS5 81 aa14.22□□□□□ -0.13
COL7A1-210ENST00000487017 PRR7Q8TB68 274 aa14.22□□□□□ -0.13
COL7A1-210ENST00000487017 PAM16Q9Y3D7 125 aa14.22□□□□□ -0.13
COL7A1-210ENST00000487017 IGHV3-21A0A0B4J1V1 117 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 PATE3B3GLJ2 98 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 HBZP02008 142 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 TRGC2P03986 189 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 AREGP15514 252 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 EIF4E3Q8N5X7 224 aaKnown RBP14.21□□□□□ -0.13
COL7A1-210ENST00000487017 ELOVL1Q9BW60 279 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 IL17BQ9UHF5 180 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 PXMP4Q9Y6I8 212 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 B4E171 279 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 RAB29O14966 203 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 PGLYRP1O75594 196 aaPredicted RBP14.21□□□□□ -0.13
COL7A1-210ENST00000487017 TSPAN7P41732 249 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 SELENOHQ8IZQ5 122 aaKnown RBP14.21□□□□□ -0.13
COL7A1-210ENST00000487017 ZNF645Q8N7E2 425 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 HSPB8Q9UJY1 196 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 CDX4O14627 284 aaPredicted RBP14.21□□□□□ -0.13
COL7A1-210ENST00000487017 KLF4O43474 513 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 KLK2P20151 261 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 WNT5AP41221 380 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 FAM209BQ5JX69 171 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 INSIG2Q9Y5U4 225 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 ATG2BQ96BY7 2078 aa14.21□□□□□ -0.13
COL7A1-210ENST00000487017 OR2H2O95918 312 aa14.21□□□□□ -0.14
COL7A1-210ENST00000487017 TMUB1Q9BVT8 246 aa14.21□□□□□ -0.14
COL7A1-210ENST00000487017 A0A1W2PPE3 182 aa14.21□□□□□ -0.14
COL7A1-210ENST00000487017 SHISA3A0PJX4 238 aa14.21□□□□□ -0.14
COL7A1-210ENST00000487017 MPDU1O75352 247 aa14.21□□□□□ -0.14
COL7A1-210ENST00000487017 PAFAH1B2P68402 229 aa14.21□□□□□ -0.14
COL7A1-210ENST00000487017 MEF2BQ02080 365 aaPredicted RBP14.21□□□□□ -0.14
COL7A1-210ENST00000487017 SNAI3Q3KNW1 292 aa14.21□□□□□ -0.14
COL7A1-210ENST00000487017 Q8WTZ3 238 aa14.21□□□□□ -0.14
COL7A1-210ENST00000487017 TBX15Q96SF7 602 aa14.21□□□□□ -0.14
COL7A1-210ENST00000487017 TMSB15BA0A087X1C1 80 aa14.2□□□□□ -0.14
COL7A1-210ENST00000487017 CLDN14O95500 239 aa14.2□□□□□ -0.14
COL7A1-210ENST00000487017 HIST1H1BP16401 226 aaKnown RBP14.2□□□□□ -0.14
COL7A1-210ENST00000487017 IGLV3-21P80748 117 aaPredicted RBP14.2□□□□□ -0.14
COL7A1-210ENST00000487017 C1orf174Q8IYL3 243 aa14.2□□□□□ -0.14
COL7A1-210ENST00000487017 OR52M1Q8NGK5 317 aa14.2□□□□□ -0.14
COL7A1-210ENST00000487017 OR5R1Q8NH85 324 aa14.2□□□□□ -0.14
COL7A1-210ENST00000487017 WNT2BQ93097 391 aa14.2□□□□□ -0.14
COL7A1-210ENST00000487017 RBKSQ9H477 322 aa14.2□□□□□ -0.14
COL7A1-210ENST00000487017 LPAR2Q9HBW0 351 aa14.2□□□□□ -0.14
COL7A1-210ENST00000487017 CEBPDP49716 269 aaPredicted RBP14.2□□□□□ -0.14
COL7A1-210ENST00000487017 LYRM7Q5U5X0 104 aa14.2□□□□□ -0.14
COL7A1-210ENST00000487017 DHRS7CA6NNS2 312 aa14.2□□□□□ -0.14
COL7A1-210ENST00000487017 THY1P04216 161 aa14.2□□□□□ -0.14
COL7A1-210ENST00000487017 CD82P27701 267 aa14.2□□□□□ -0.14
COL7A1-210ENST00000487017 P2RX4Q99571 388 aa14.2□□□□□ -0.14
COL7A1-210ENST00000487017 DIRC3C9JPN6 131 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 CDK2AP1O14519 115 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 UCP2P55851 309 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 TMEM251Q8N6I4 163 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 SCARF2Q96GP6 870 aaPredicted RBP14.19□□□□□ -0.14
COL7A1-210ENST00000487017 Q96M66 194 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 OR2V2Q96R30 315 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 PAXXQ9BUH6 204 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 BRS3P32247 399 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 C19orf48Q6RUI8 117 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 TPRX1Q8N7U7 411 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 GPR146Q96CH1 333 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 TXNDC17Q9BRA2 123 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 RABAC1Q9UI14 185 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 TMEM14DPA8MWL7 114 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 CORTO00230 105 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 MGST3O14880 152 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 NDUFB4O95168 129 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 CD99P14209 185 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 CRYBA2P53672 197 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 CD8AP01732 235 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 CTSBP07858 339 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 OR8A1Q8NGG7 326 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 TAF15Q92804 592 aaKnown RBP eCLIP14.19□□□□□ -0.14
COL7A1-210ENST00000487017 AUP1Q9Y679 476 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 RND1Q92730 232 aa14.19□□□□□ -0.14
COL7A1-210ENST00000487017 MPTX1A8MV57 137 aa14.18□□□□□ -0.14
COL7A1-210ENST00000487017 ZNF137PP52743 207 aa14.18□□□□□ -0.14
COL7A1-210ENST00000487017 SRSF9Q13242 221 aaKnown RBP eCLIP14.18□□□□□ -0.14
COL7A1-210ENST00000487017 MARS2Q96GW9 593 aaKnown RBP14.18□□□□□ -0.14
COL7A1-210ENST00000487017 SLC25A10Q9UBX3 287 aaPredicted RBP14.18□□□□□ -0.14
COL7A1-210ENST00000487017 ARID2Q68CP9 1835 aa14.18□□□□□ -0.14
COL7A1-210ENST00000487017 PARP14Q460N5 1801 aa14.18□□□□□ -0.14
COL7A1-210ENST00000487017 EGR4Q05215 589 aa14.18□□□□□ -0.14
COL7A1-210ENST00000487017 C1RLQ9NZP8 487 aa14.18□□□□□ -0.14
COL7A1-210ENST00000487017 ZNFX1Q9P2E3 1918 aaKnown RBP14.18□□□□□ -0.14
COL7A1-210ENST00000487017 HERVK_113P61574 105 aa14.18□□□□□ -0.14
COL7A1-210ENST00000487017 OR8I2Q8N0Y5 310 aa14.18□□□□□ -0.14
COL7A1-210ENST00000487017 ZNF343Q6P1L6 599 aa14.18□□□□□ -0.14
COL7A1-210ENST00000487017 POC1AQ8NBT0 407 aa14.18□□□□□ -0.14
COL7A1-210ENST00000487017 APOBEC4Q8WW27 367 aaKnown RBP14.18□□□□□ -0.14
COL7A1-210ENST00000487017 GREB1LQ9C091 1923 aaPredicted RBP14.18□□□□□ -0.14
COL7A1-210ENST00000487017 MS4A5Q9H3V2 200 aa14.18□□□□□ -0.14
COL7A1-210ENST00000487017 H0YL77 283 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 K7N7A8 449 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 TCF21O43680 179 aa14.17□□□□□ -0.14
COL7A1-210ENST00000487017 DANCRP0C864 163 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms