RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 C1orf105O95561 183 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 SFT2D2O95562 160 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 APBB3O95704 486 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 HMGN2P05204 90 aaKnown RBP4.11□□□□□ -1.75
USP40-213ENST00000483216 CSN2P05814 226 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 ADRA2AP08913 450 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 OR8U9P0C7N5 309 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 ADCYAP1P18509 176 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 S100GP29377 79 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 RPL12P30050 165 aaKnown RBP4.11□□□□□ -1.75
USP40-213ENST00000483216 P2RY1P47900 373 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 CSNK1A1P48729 337 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 DNASE1L1P49184 302 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 DHPSP49366 369 aaPredicted RBP4.11□□□□□ -1.75
USP40-213ENST00000483216 ARF6P62330 175 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 PAFAH1B2P68402 229 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 BTG2P78543 158 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 BAXQ07812 192 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 RAB35Q15286 201 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 OR8G1Q15617 311 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 CEBPEQ15744 281 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 TMEM183BQ1AE95 376 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 COX19Q49B96 90 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 HIKESHIQ53FT3 197 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 COA6Q5JTJ3 125 aaKnown RBP4.11□□□□□ -1.75
USP40-213ENST00000483216 LY6G6FQ5SQ64 297 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 PIP5KL1Q5T9C9 394 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 TPGS2Q68CL5 300 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 OR2T2Q6IF00 324 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 LEG1Q6P5S2 330 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 FAM159AQ6UWV7 190 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 SPNS3Q6ZMD2 512 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 ZNF573Q86YE8 665 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 SGPP2Q8IWX5 399 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 BATF2Q8N1L9 274 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 ZNF619Q8N2I2 560 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 FAM24BQ8N5W8 94 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 CSNK1A1LQ8N752 337 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 SLC26A10Q8NG04 563 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 OR52E1Q8NGJ3 308 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 OR8U1Q8NH10 309 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 FNDC9Q8TBE3 224 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 TMEM106AQ96A25 262 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 SLC25A38Q96DW6 304 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 MS4A8Q9BY19 250 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 PRO3102Q9H379 93 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 WDR76Q9H967 626 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 SPACA1Q9HBV2 294 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 SIGLEC7Q9Y286 467 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 CHTOPQ9Y3Y2 248 aaKnown RBP4.11□□□□□ -1.75
USP40-213ENST00000483216 HEBP2Q9Y5Z4 205 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 BRCA2P51587 3418 aa4.11□□□□□ -1.75
USP40-213ENST00000483216 ANKRD12Q6UB98 2062 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 TET1Q8NFU7 2136 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 EEF1E1-BLOC1S5C9J1V9 151 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 C9J4A7 227 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 DCTN6O00399 190 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 XKRYO14609 159 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 TP53I11O14683 189 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 DLEU1O43261 78 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 RAMP1O60894 148 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 TBL1XO60907 577 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 TIMP1P01033 207 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 KLK3P07288 261 aaPredicted RBP4.1□□□□□ -1.75
USP40-213ENST00000483216 SLC35G4P0C7Q5 338 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 CBR1P16152 277 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 RPS4Y1P22090 263 aaKnown RBP4.1□□□□□ -1.75
USP40-213ENST00000483216 AK4P27144 223 aaPredicted RBP4.1□□□□□ -1.75
USP40-213ENST00000483216 NOVA1P51513 510 aaKnown RBP4.1□□□□□ -1.75
USP40-213ENST00000483216 ATP1B3P54709 279 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 LCN2P80188 198 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 ZNF616Q08AN1 781 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 MADCAM1Q13477 382 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 OR1Q1Q15612 314 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 CDKN3Q16667 212 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 C2orf83Q53S99 150 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 PYY3Q5JQD4 70 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 TOMM20LQ6UXN7 152 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 SLC25A26Q70HW3 274 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 SSX7Q7RTT5 188 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 TGIF2LXQ8IUE1 241 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 HIST3H2BBQ8N257 126 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 LRRC25Q8N386 305 aaPredicted RBP4.1□□□□□ -1.75
USP40-213ENST00000483216 OR10A7Q8NGE5 316 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 OR5D14Q8NGL3 314 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 OR4A4PQ8NGN8 299 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 OR13C2Q8NGS9 318 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 OR6K2Q8NGY2 324 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 OR8S1Q8NH09 359 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 C22orf15Q8WYQ4 148 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 RAB8BQ92930 207 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 MCHR2Q969V1 340 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 MRPL38Q96DV4 380 aaKnown RBP4.1□□□□□ -1.75
USP40-213ENST00000483216 SEH1LQ96EE3 360 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 FAM210BQ96KR6 192 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 ZNF75AQ96N20 296 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 OR7D2Q96RA2 312 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 TBX5Q99593 518 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 GINS3Q9BRX5 216 aa4.1□□□□□ -1.75
USP40-213ENST00000483216 DDA1Q9BW61 102 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms