RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 TMED4Q7Z7H5 227 aa8.32□□□□□ -1.08
USP39-215ENST00000481409 LYG2Q86SG7 212 aa8.32□□□□□ -1.08
USP39-215ENST00000481409 ABHD12Q8N2K0 398 aa8.32□□□□□ -1.08
USP39-215ENST00000481409 TEX29Q8N6K0 151 aa8.32□□□□□ -1.08
USP39-215ENST00000481409 OR8U1Q8NH10 309 aa8.32□□□□□ -1.08
USP39-215ENST00000481409 CD300LFQ8TDQ1 290 aa8.32□□□□□ -1.08
USP39-215ENST00000481409 ZNF431Q8TF32 576 aaPredicted RBP8.32□□□□□ -1.08
USP39-215ENST00000481409 RTN4IP1Q8WWV3 396 aaPredicted RBP8.32□□□□□ -1.08
USP39-215ENST00000481409 Q96MF0 132 aa8.32□□□□□ -1.08
USP39-215ENST00000481409 SIRPDQ9H106 197 aa8.32□□□□□ -1.08
USP39-215ENST00000481409 OR2D2Q9H210 308 aa8.32□□□□□ -1.08
USP39-215ENST00000481409 LPAR2Q9HBW0 351 aa8.32□□□□□ -1.08
USP39-215ENST00000481409 FLVCR2Q9UPI3 526 aa8.32□□□□□ -1.08
USP39-215ENST00000481409 PSG11Q9UQ72 335 aa8.32□□□□□ -1.08
USP39-215ENST00000481409 PTPN13Q12923 2485 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 IGHV3-43A0A0B4J1X8 118 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 TEX13DA0A0J9YY54 714 aaPredicted RBP8.31□□□□□ -1.08
USP39-215ENST00000481409 DUXBA0A1W2PPF3 345 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 OOSP1A8MZH6 123 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 MPPED1O15442 326 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 PGLYRP1O75594 196 aaPredicted RBP8.31□□□□□ -1.08
USP39-215ENST00000481409 MMP23AO75900 390 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 TOX4O94842 621 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 SFT2D2O95562 160 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 IGLV1-47P01700 117 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 HLA-AP01891 365 aaKnown RBP8.31□□□□□ -1.08
USP39-215ENST00000481409 IGHV3-43DP0DP04 118 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 MMP9P14780 707 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 AKR1C4P17516 323 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 F2RP25116 425 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 CEACAM3P40198 252 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 KIR2DS2P43631 304 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 BPIFB3P59826 476 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 ARF6P62330 175 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 LTC4SQ16873 150 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 HLA-DRB5Q30154 266 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 CT45A1Q5HYN5 189 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 MINOS1Q5TGZ0 78 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 ZNF626Q68DY1 528 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 ZNF818PQ6ZRF7 136 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 GLCCI1Q86VQ1 547 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 KRTAP1-3Q8IUG1 177 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 Q8N7P7 452 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 CT45A3Q8NHU0 189 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 COQ8AQ8NI60 647 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 UBALD1Q8TB05 177 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 CHAC2Q8WUX2 184 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 ASB13Q8WXK3 278 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 IL22RA2Q969J5 263 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 PHB2Q99623 299 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 IFI27L2Q9H2X8 130 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 NAA60Q9H7X0 242 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 CCL28Q9NRJ3 127 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 LIN7CQ9NUP9 197 aaKnown RBP8.31□□□□□ -1.08
USP39-215ENST00000481409 KCNS2Q9ULS6 477 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 MINOS1-NBL1R4GNA1 71 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 YLPM1P49750 1951 aaKnown RBP8.31□□□□□ -1.08
USP39-215ENST00000481409 SPG11Q96JI7 2443 aa8.31□□□□□ -1.08
USP39-215ENST00000481409 GCN1Q92616 2671 aaKnown RBP8.3□□□□□ -1.08
USP39-215ENST00000481409 CRYBG3Q68DQ2 2970 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 C3orf85A0A1B0GTC6 90 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 C9orf170A2RU37 121 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 H0Y980 276 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 ST8SIA5O15466 376 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 RBFOX2O43251 390 aaKnown RBP eCLIP8.3□□□□□ -1.08
USP39-215ENST00000481409 ATG12O94817 140 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 IFNA2P01563 188 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 IGLV2-14P01704 120 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 RRASP10301 218 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 ANXA7P20073 488 aaKnown RBP8.3□□□□□ -1.08
USP39-215ENST00000481409 THBS3P49746 956 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 UBE2E1P51965 193 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 ZNF134P52741 427 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 RAB25P57735 213 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 BAMBIQ13145 260 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 DHRS2Q13268 280 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 EIF4EBP1Q13541 118 aaPredicted RBP8.3□□□□□ -1.08
USP39-215ENST00000481409 MIDNQ504T8 468 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 DCAF12L2Q5VW00 463 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 ZNF833PQ6ZTB9 187 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 VMO1Q7Z5L0 202 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 C5orf24Q7Z6I8 188 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 DRAM1Q8N682 238 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 LRTM2Q8N967 370 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 OR10X1Q8NGY0 326 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 MITD1Q8WV92 249 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 TMEM230Q96A57 120 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 AIFM2Q9BRQ8 373 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 PCGF1Q9BSM1 259 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 OR51J1Q9H342 316 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 SDHAF2Q9NX18 166 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 PRELID3BQ9Y3B1 194 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 TBL2Q9Y4P3 447 aaKnown RBP8.3□□□□□ -1.08
USP39-215ENST00000481409 FBN2P35556 2912 aa8.3□□□□□ -1.08
USP39-215ENST00000481409 ANKRD17O75179 2603 aaKnown RBP8.3□□□□□ -1.08
USP39-215ENST00000481409 UTP20O75691 2785 aaKnown RBP8.29□□□□□ -1.08
USP39-215ENST00000481409 FASNP49327 2511 aaKnown RBP8.29□□□□□ -1.08
USP39-215ENST00000481409 A0A0A6YYJ9 748 aa8.29□□□□□ -1.08
USP39-215ENST00000481409 ODF3BA8MYP8 253 aa8.29□□□□□ -1.08
USP39-215ENST00000481409 RNF223E7ERA6 249 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms