RNA–Protein interactions for RNA: ENST00000474871.5

NPHP3-206, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 4,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-206ENST00000474871 ZNF761Q86XN6 746 aaPredicted RBP4.11□□□□□ -1.75
NPHP3-206ENST00000474871 ZCCHC24Q8N2G6 241 aaKnown RBP4.11□□□□□ -1.75
NPHP3-206ENST00000474871 FCAMRQ8WWV6 532 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 C8orf44Q96CB5 159 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 HSH2DQ96JZ2 352 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 RDH14Q9HBH5 336 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 SH2D2AQ9NP31 389 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 HEYLQ9NQ87 328 aaPredicted RBP4.11□□□□□ -1.75
NPHP3-206ENST00000474871 CDC42EP3Q9UKI2 254 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 CCDC88CQ9P219 2028 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 GGT3PA6NGU5 568 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 SLC22A20A6NK97 555 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 CPSF4LA6NMK7 179 aaKnown RBP4.11□□□□□ -1.75
NPHP3-206ENST00000474871 PRKNO60260 465 aaPredicted RBP4.11□□□□□ -1.75
NPHP3-206ENST00000474871 LINC00869P0C866 280 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 CDSNQ15517 529 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 ARL6Q9H0F7 186 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 GPR84Q9NQS5 396 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 LHX3Q9UBR4 397 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 AK6Q9Y3D8 172 aaKnown RBP4.11□□□□□ -1.75
NPHP3-206ENST00000474871 OR4C46A6NHA9 309 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 ZNF727A8MUV8 499 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 CCL22O00626 93 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 SBK3P0C264 359 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 FKBP2P26885 142 aaKnown RBP4.11□□□□□ -1.75
NPHP3-206ENST00000474871 RPS13P62277 151 aaKnown RBP4.11□□□□□ -1.75
NPHP3-206ENST00000474871 ATP5G2Q06055 141 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 MGAT2Q10469 447 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 ZNF146Q15072 292 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 ZNF542PQ5EBM4 170 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 SFRP4Q6FHJ7 346 aaPredicted RBP4.11□□□□□ -1.75
NPHP3-206ENST00000474871 DGAT2L7PQ6IED9 249 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 GRHL2Q6ISB3 625 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 EXOC3-AS1Q8N2X6 119 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 OR2L13Q8N349 312 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 CLDN19Q8N6F1 224 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 THEM6Q8WUY1 208 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 NEIL2Q969S2 332 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 SPTSSAQ969W0 71 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 MCHR1Q99705 422 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 NDUFB11Q9NX14 153 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 TAS2R8Q9NYW2 309 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 CLEC1BQ9P126 229 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 KLHL13Q9P2N7 655 aa4.11□□□□□ -1.75
NPHP3-206ENST00000474871 A0A0B4J2A0 478 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 GXYLT2A0PJZ3 443 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 EPM2AB3EWF7 344 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 SCRG1O75711 98 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 H2BFMP0C1H6 154 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 LPAR6P43657 344 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 RPS10P46783 165 aaKnown RBP4.1□□□□□ -1.75
NPHP3-206ENST00000474871 REG1BP48304 166 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 PGGT1BP53609 377 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 SPRNQ5BIV9 151 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 FAM78AQ5JUQ0 283 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 DCST2Q5T1A1 773 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 C1orf189Q5VU69 101 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 Q6AWC8 147 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 COX15Q7KZN9 410 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 WFDC5Q8TCV5 224 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 BTF3L4Q96K17 158 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 RNASE7Q9H1E1 156 aaKnown RBP4.1□□□□□ -1.75
NPHP3-206ENST00000474871 PNRC2Q9NPJ4 139 aaKnown RBP4.1□□□□□ -1.75
NPHP3-206ENST00000474871 SHPKQ9UHJ6 478 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 TP53TG1Q9Y2A0 90 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 LOXL2Q9Y4K0 774 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 TRAV36DV7A0A075B6V5 113 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 RNF212BA8MTL3 300 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 K7EP34 96 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 EFNA2O43921 213 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 SLC25A4P12235 298 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 PYDC2Q56P42 97 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 RNF144BQ7Z419 303 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 CDC20BQ86Y33 519 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 PRR22Q8IZ63 422 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 TTC9CQ8N5M4 171 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 SMIM3Q9BZL3 60 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 C16orf95Q9H693 158 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 ZNF835Q9Y2P0 537 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 PRRC2BQ5JSZ5 2229 aaKnown RBP4.1□□□□□ -1.75
NPHP3-206ENST00000474871 TLCD2A6NGC4 264 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 UNC119BA6NIH7 251 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 LOC730098B7Z3J9 87 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 SLC17A3O00476 420 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 PRAF2O60831 178 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 WISP3O95389 354 aaPredicted RBP4.1□□□□□ -1.75
NPHP3-206ENST00000474871 WNT1P04628 370 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 CELP19835 753 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 CCR2P41597 374 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 RAB40BQ12829 278 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 OR10J3Q5JRS4 329 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 ZNF548Q8NEK5 533 aaPredicted RBP4.1□□□□□ -1.75
NPHP3-206ENST00000474871 FAM173AQ9BQD7 235 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 LRRC61Q9BV99 259 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 C5orf66Q9H5L9 145 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 TP73-AS1Q9UF72 201 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 KLF13Q9Y2Y9 288 aaPredicted RBP4.1□□□□□ -1.75
NPHP3-206ENST00000474871 OARD1Q9Y530 152 aa4.1□□□□□ -1.75
NPHP3-206ENST00000474871 PRSS38A1L453 326 aa4.09□□□□□ -1.75
NPHP3-206ENST00000474871 ZNF860A6NHJ4 632 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms