RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 C5orf49A4QMS7 147 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 RBMY1BA6NDE4 496 aaKnown RBP3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 RBMY1EA6NEQ0 496 aaKnown RBP3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 FAM183AA6NL82 134 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 KRBOX1C9JBD0 128 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 I3L521 148 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 DNASE2O00115 360 aaPredicted RBP3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 TRAF3IP2O43734 574 aaPredicted RBP3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 DHRS3O75911 302 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 NGFP01138 241 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 HLA-DQB2P05538 268 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 EIF4EP06730 217 aaKnown RBP3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 RBMY1DP0C7P1 496 aaKnown RBP3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 RBMY1A1P0DJD3 496 aaKnown RBP3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 IGKV1-13P0DP09 117 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 TDGF1P13385 188 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 FOLR2P14207 255 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 MFAP2P55001 183 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 COPZ1P61923 177 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 SNRPD2P62316 118 aaKnown RBP3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 CACNG7P62955 275 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 RHOGP84095 191 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 IFITM3Q01628 133 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 JOSD1Q15040 202 aaPredicted RBP3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 C12orf74Q32Q52 190 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 MESTQ5EB52 335 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 COL5A1-AS1Q5SY13 56 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 ZC2HC1BQ5TFG8 222 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 SCGB1D4Q6XE38 83 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 KRTCAP2Q8N6L1 136 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 ZNRF4Q8WWF5 429 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 CCL17Q92583 94 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 ZNF689Q96CS4 500 aaPredicted RBP3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 ADAT3Q96EY9 351 aaPredicted RBP3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 PHYHIPLQ96FC7 376 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 SMIM8Q96KF7 97 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 MGLLQ99685 303 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 NRTNQ99748 197 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 NOX3Q9HBY0 568 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 SPRR3Q9UBC9 169 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 TMEM2Q9UHN6 1383 aa3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 DENND4BO75064 1496 aaPredicted RBP3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 COL2A1P02458 1487 aaPredicted RBP3.72□□□□□ -1.81
CCDC88A-210ENST00000468534 YEATS2Q9ULM3 1422 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 TRAV8-6A0A0B4J262 113 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 A0A0B4J2A0 478 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 A0A0G2JN53 185 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 LOC100130705A0A1B0GUX0 176 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 IQCMA0A1B0GVH7 501 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 IFITM5A6NNB3 132 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 H0Y9J4 135 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 SAP18O00422 153 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 HCRTR1O43613 425 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 FRMD6-AS1P0C7T7 363 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 CTLA4P16410 223 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 CCL1P22362 96 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 DRD3P35462 400 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 CSRP3P50461 194 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 SLC25A1P53007 311 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 SLC18A1P54219 525 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 CTBP2P56545 445 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 TAS2R20P59543 309 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 DAD1P61803 113 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 HLA-DRB3P79483 266 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 PRR3P79522 188 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 GNA12Q03113 381 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 LOXL1Q08397 574 aaPredicted RBP3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 PSG7Q13046 419 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 DAZ2Q13117 558 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 ARFRP1Q13795 201 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 ENDOGQ14249 297 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 SLC10A1Q14973 349 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 GUCA2BQ16661 112 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 SLC25A30Q5SVS4 291 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 HRCT1Q6UXD1 115 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 TCF23Q7RTU1 214 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 DAZ4Q86SG3 579 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 SGPP2Q8IWX5 399 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 SAMD12Q8N8I0 201 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 ZNF491Q8N8L2 437 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 NUP35Q8NFH5 326 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 OR5A2Q8NGI9 324 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 OR4C3Q8NH37 302 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 FNDC9Q8TBE3 224 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 TMEM159Q96B96 161 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 PGLYRP4Q96LB8 373 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 ZNF300Q96RE9 604 aaPredicted RBP3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 PRSS27Q9BQR3 290 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 TMEM147Q9BVK8 224 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 SLIRPQ9GZT3 109 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 C20orf85Q9H1P6 137 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 DAZ1Q9NQZ3 744 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 DAZ3Q9NR90 486 aaKnown RBP3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 ZNF226Q9NYT6 803 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 SHPKQ9UHJ6 478 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 KLF13Q9Y2Y9 288 aaPredicted RBP3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 WASHC3Q9Y3C0 194 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 RTL1A6NKG5 1358 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 BCL9LQ86UU0 1499 aa3.71□□□□□ -1.82
CCDC88A-210ENST00000468534 IFT140Q96RY7 1462 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms