RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 KRBOX4Q5JUW0 171 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 SPANXN5Q5MJ07 72 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 BTNL3Q6UXE8 466 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 KDF1Q8NAX2 398 aaPredicted RBP7.5□□□□□ -1.21
SYNE1-217ENST00000466159 STARD4Q96DR4 205 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 EGLN1Q9GZT9 426 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 VSIRQ9H7M9 311 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 ZNF71Q9NQZ8 489 aaPredicted RBP7.5□□□□□ -1.21
SYNE1-217ENST00000466159 PTPRBP23467 1997 aa7.5□□□□□ -1.21
SYNE1-217ENST00000466159 IGHV3-43A0A0B4J1X8 118 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 A0A1W2PPE2 198 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 BTBD17A6NE02 478 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 IGLV1-44P01699 117 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 IGHV3-43DP0DP04 118 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 KITLGP21583 273 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 GCH1P30793 250 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 BRWD1-AS2P59051 145 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 TLE4Q04727 773 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 ICAM4Q14773 271 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 ZNF718Q3SXZ3 478 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 SEM1Q6ZVN7 128 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 FAM24BQ8N5W8 94 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 ZNF525Q8N782 197 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 OR13A1Q8NGR1 328 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 RFESDQ8TAC1 157 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 DCTN5Q9BTE1 182 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 SMDT1Q9H4I9 107 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 BIN3Q9NQY0 253 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 RPRMQ9NS64 109 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 RNF212BA8MTL3 300 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 DEFB108AA8MXU0 73 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 ATXN7O15265 892 aaPredicted RBP7.49□□□□□ -1.21
SYNE1-217ENST00000466159 SCAF4O95104 1147 aaKnown RBP7.49□□□□□ -1.21
SYNE1-217ENST00000466159 CGAP01215 116 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 SRP19P09132 144 aaKnown RBP7.49□□□□□ -1.21
SYNE1-217ENST00000466159 FOLR2P14207 255 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 UBE2KP61086 200 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 S100A12P80511 92 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 CLDND2Q8NHS1 167 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 SNIP1Q8TAD8 396 aaKnown RBP7.49□□□□□ -1.21
SYNE1-217ENST00000466159 SCGB1C1Q8TD33 95 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 PROCRQ9UNN8 238 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 MMP24Q9Y5R2 645 aa7.49□□□□□ -1.21
SYNE1-217ENST00000466159 hCG_1809904A0A1W2PP81 198 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 A0A1W2PR64 198 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 A0A1W2PRV1 198 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 OR5H1A6NKK0 313 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 C17orf98A8MV24 154 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 AHRRA9YTQ3 701 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 MT-ND4LP03901 98 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 EIF4EBP1Q13541 118 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-217ENST00000466159 HNF4GQ14541 408 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 RHEBQ15382 184 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 MSMPQ1L6U9 139 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 BHLHA15Q7RTS1 189 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-217ENST00000466159 LRP11Q86VZ4 500 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 LILRB2Q8N423 598 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 CD177Q8N6Q3 437 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 CYB561D1Q8N8Q1 229 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 PRR7Q8TB68 274 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 LRRC29Q8WV35 223 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 NINJ1Q92982 152 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 TUBA4BQ9H853 241 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 ICE1Q9Y2F5 2266 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 ZNF318Q5VUA4 2279 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 H3BQ15 152 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 S1PR2O95136 353 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 PTAFRP25105 342 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 PLA2G5P39877 138 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 TNFRSF9Q07011 255 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 ZNF726P1Q15940 193 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 LTC4SQ16873 150 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 LRRC75BQ2VPJ9 315 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 SMIM21Q3B7S5 101 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 ZNF506Q5JVG8 444 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 MBNL2Q5VZF2 373 aaKnown RBP7.48□□□□□ -1.21
SYNE1-217ENST00000466159 OR8G2PQ6IF36 304 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 DPPA3Q6W0C5 159 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 SSX7Q7RTT5 188 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 OR2Z1Q8NG97 314 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 OR4C12Q96R67 309 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 C12orf57Q99622 126 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 RBKSQ9H477 322 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 COA4Q9NYJ1 87 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 DUSP13Q9UII6 198 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 ODAMA1E959 279 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 EIF3GO75821 320 aaKnown RBP eCLIP7.48□□□□□ -1.21
SYNE1-217ENST00000466159 CLDN1O95832 211 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 EGR1P18146 543 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 RAB5BP61020 215 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 HBG1P69891 147 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 HBG2P69892 147 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 EDDM3AQ14507 147 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 LCN15Q6UWW0 184 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 RPRMLQ8N4K4 120 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 ZBTB34Q8NCN2 500 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 TCTEX1D2Q8WW35 142 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 RBMXL1Q96E39 390 aaKnown RBP7.48□□□□□ -1.21
SYNE1-217ENST00000466159 PLPPR2Q96GM1 343 aa7.48□□□□□ -1.21
SYNE1-217ENST00000466159 HIPK2Q9H2X6 1198 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms