RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 TMEM95Q3KNT9 176 aa9.31□□□□□ -0.92
CUX1-207ENST00000465461 LY6G6FQ5SQ64 297 aa9.31□□□□□ -0.92
CUX1-207ENST00000465461 TMEM69Q5SWH9 247 aa9.31□□□□□ -0.92
CUX1-207ENST00000465461 GLDNQ6ZMI3 551 aaPredicted RBP9.31□□□□□ -0.92
CUX1-207ENST00000465461 LIAT1Q6ZQX7 453 aa9.31□□□□□ -0.92
CUX1-207ENST00000465461 OR4C13Q8NGP0 309 aa9.31□□□□□ -0.92
CUX1-207ENST00000465461 OR10J5Q8NHC4 309 aa9.31□□□□□ -0.92
CUX1-207ENST00000465461 ISOC1Q96CN7 298 aa9.31□□□□□ -0.92
CUX1-207ENST00000465461 KCTD12Q96CX2 325 aaKnown RBP9.31□□□□□ -0.92
CUX1-207ENST00000465461 RITA1Q96K30 269 aa9.31□□□□□ -0.92
CUX1-207ENST00000465461 RBM14Q96PK6 669 aaKnown RBP9.31□□□□□ -0.92
CUX1-207ENST00000465461 ZNF251Q9BRH9 671 aa9.31□□□□□ -0.92
CUX1-207ENST00000465461 AGMATQ9BSE5 352 aa9.31□□□□□ -0.92
CUX1-207ENST00000465461 CABLES2Q9BTV7 478 aa9.31□□□□□ -0.92
CUX1-207ENST00000465461 NPFFR1Q9GZQ6 430 aa9.31□□□□□ -0.92
CUX1-207ENST00000465461 C16orf95Q9H693 158 aa9.31□□□□□ -0.92
CUX1-207ENST00000465461 RAB18Q9NP72 206 aa9.31□□□□□ -0.92
CUX1-207ENST00000465461 MRPS7Q9Y2R9 242 aaKnown RBP9.31□□□□□ -0.92
CUX1-207ENST00000465461 CEPT1Q9Y6K0 416 aa9.31□□□□□ -0.92
CUX1-207ENST00000465461 A0A0A6YYH2 397 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 A6NJ64 397 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 POM121CA8CG34 1229 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 FAM25AB3EWG3 89 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 FAM25CB3EWG5 89 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 FAM25GB3EWG6 89 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 H3BMQ9 156 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 LANCL1O43813 399 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 PROP1O75360 226 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 OR2F2O95006 317 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 AMY1AP04745 511 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 AMY2AP04746 511 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 OR8U9P0C7N5 309 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 TMBIM6P55061 237 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 PITPNAQ00169 270 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 ABCA11PQ4W5N1 156 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 Q6ZS49 121 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 ZNF833PQ6ZTB9 187 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 THNSL2Q86YJ6 484 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 DRAXINQ8NBI3 349 aaPredicted RBP9.3□□□□□ -0.92
CUX1-207ENST00000465461 OR8U1Q8NH10 309 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 RAB2BQ8WUD1 216 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 EAF1Q96JC9 268 aaPredicted RBP9.3□□□□□ -0.92
CUX1-207ENST00000465461 NABP2Q9BQ15 211 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 GINS4Q9BRT9 223 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 ZNF747Q9BV97 191 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 MMP24Q9Y5R2 645 aa9.3□□□□□ -0.92
CUX1-207ENST00000465461 CCDC160A6NGH7 325 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 CTDSP2O14595 271 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 RAB29O14966 203 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 HLA-DQB1P01920 261 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 LPLP06858 475 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 CT45A6P0DMU7 189 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 CT45A5P0DMU8 189 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 CT45A7P0DMV0 189 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 NFYAP23511 347 aaPredicted RBP9.29□□□□□ -0.92
CUX1-207ENST00000465461 F2RL1P55085 397 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 PROK1P58294 105 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 LSAMPQ13449 338 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 SRSF7Q16629 238 aaKnown RBP eCLIP9.29□□□□□ -0.92
CUX1-207ENST00000465461 RNASE12Q5GAN4 147 aaKnown RBP9.29□□□□□ -0.92
CUX1-207ENST00000465461 C9orf152Q5JTZ5 239 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 MZT2AQ6P582 158 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 HOGA1Q86XE5 327 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 SNX29P2Q8IUI4 249 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 H1FOOQ8IZA3 346 aaPredicted RBP9.29□□□□□ -0.92
CUX1-207ENST00000465461 DYNC2LI1Q8TCX1 351 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 WFDC12Q8WWY7 111 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 ACOT12Q8WYK0 555 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 C5orf30Q96GV9 206 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 PIPOXQ9P0Z9 390 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 ANXA10Q9UJ72 324 aa9.29□□□□□ -0.92
CUX1-207ENST00000465461 NCBP2LA6PVI3 153 aaKnown RBP9.28□□□□□ -0.92
CUX1-207ENST00000465461 NOL3O60936 208 aaKnown RBP9.28□□□□□ -0.92
CUX1-207ENST00000465461 APOA1P02647 267 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 VSIG10L2P0DP72 767 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 CNTFRP26992 372 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 CD1BP29016 333 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 GPR12P47775 334 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 EBI3Q14213 229 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 ARSJQ5FYB0 599 aaPredicted RBP9.28□□□□□ -0.92
CUX1-207ENST00000465461 C11orf44Q8N8P7 122 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 BEST4Q8NFU0 473 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 OR2T10Q8NGZ9 312 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 OR2T6Q8NHC8 308 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 EDARADDQ8WWZ3 215 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 AP3S1Q92572 193 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 SNAPC3Q92966 411 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 PRSS22Q9GZN4 317 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 TOLLIPQ9H0E2 274 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 OR2D2Q9H210 308 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 MIXL1Q9H2W2 232 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 RANBP3Q9H6Z4 567 aaPredicted RBP9.28□□□□□ -0.92
CUX1-207ENST00000465461 SERTAD4Q9NUC0 356 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 EXTL2Q9UBQ6 330 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 ZNF221Q9UK13 617 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 MOB4Q9Y3A3 225 aa9.28□□□□□ -0.92
CUX1-207ENST00000465461 RBM7Q9Y580 266 aaKnown RBP9.28□□□□□ -0.92
CUX1-207ENST00000465461 A0A1B0GUS0 222 aa9.27□□□□□ -0.93
CUX1-207ENST00000465461 SMIM31A0A1B0GVY4 71 aa9.27□□□□□ -0.93
CUX1-207ENST00000465461 M0R1X1 148 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms