RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ZNF727A8MUV8 499 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 ALX3O95076 343 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 MT-ND4LP03901 98 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 APELAP0DMC3 54 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 CRYGSP22914 178 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 NCR3LG1Q68D85 454 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 SLC35E4Q6ICL7 350 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 TMEM65Q6PI78 240 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 TM2D1Q9BX74 207 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 BARX1Q9HBU1 254 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-213ENST00000448038 SIRT7Q9NRC8 400 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 ZNF835Q9Y2P0 537 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 ZNF729A6NN14 1252 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-213ENST00000448038 NPBWR1P48145 328 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 PLAC9Q5JTB6 97 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 RPL7L1Q6DKI1 246 aaKnown RBP6.3□□□□□ -1.4
SYNE1-213ENST00000448038 NEU4Q8WWR8 484 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-213ENST00000448038 GINS3Q9BRX5 216 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 CLCF1Q9UBD9 225 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 JPT1Q9UK76 154 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 POMT1Q9Y6A1 747 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 HEATR1Q9H583 2144 aaKnown RBP6.3□□□□□ -1.4
SYNE1-213ENST00000448038 SPTBN1Q01082 2364 aaKnown RBP6.3□□□□□ -1.4
SYNE1-213ENST00000448038 PLXNB3Q9ULL4 1909 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 PQLC2LA1A4F0 135 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 H0Y980 276 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 ZG16O60844 167 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 CT45A10P0DMU9 189 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 CCL1P22362 96 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 MC5RP33032 325 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 SSTR5P35346 364 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 SMIM15Q7Z3B0 74 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 LILRB1Q8NHL6 650 aaPredicted RBP6.3□□□□□ -1.4
SYNE1-213ENST00000448038 GPHA2Q96T91 129 aa6.3□□□□□ -1.4
SYNE1-213ENST00000448038 MRPL37Q9BZE1 423 aaKnown RBP6.3□□□□□ -1.4
SYNE1-213ENST00000448038 HEATR5AQ86XA9 2040 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 ZNF785A8K8V0 405 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 J3QR06 171 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 SPNS3Q6ZMD2 512 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 CHODLQ9H9P2 273 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 RNF24Q9Y225 148 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 PCNX1Q96RV3 2341 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 PGLYRP1O75594 196 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-213ENST00000448038 LIPFP07098 398 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 OVCH2Q7RTZ1 564 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 ABHD12Q8N2K0 398 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 PLXND1Q9Y4D7 1925 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 IGKV1-9A0A0C4DH69 117 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 PLAURQ03405 335 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 TMEM222Q9H0R3 208 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 NPDC1Q9NQX5 325 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-213ENST00000448038 DOK5Q9P104 306 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 LRRK1Q38SD2 2015 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 A0A0G2JNJ9 132 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 MBD3L4A6NDZ8 208 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-213ENST00000448038 MBD3L3A6NE82 208 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-213ENST00000448038 MBD3L5A6NJ08 208 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-213ENST00000448038 TXNL1O43396 289 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 SOX15O60248 233 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 HNF1AP20823 631 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 WNT5AP41221 380 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 TIGITQ495A1 244 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 MIDNQ504T8 468 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 MBD3L2Q8NHZ7 208 aaPredicted RBP6.29□□□□□ -1.4
SYNE1-213ENST00000448038 RHOVQ96L33 236 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 Q9UFV3 132 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 OR51B2Q9Y5P1 312 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 ESPL1Q14674 2120 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 NPY1RP25929 384 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 HTR1DP28221 377 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 ARL16Q0P5N6 197 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 NR2C2APQ86WQ0 139 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 ZCCHC24Q8N2G6 241 aaKnown RBP6.29□□□□□ -1.4
SYNE1-213ENST00000448038 FAM216BQ8N7L0 139 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 LURAP1Q96LR2 239 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 BIN3Q9NQY0 253 aa6.29□□□□□ -1.4
SYNE1-213ENST00000448038 MMP7P09237 267 aaPredicted RBP6.28□□□□□ -1.4
SYNE1-213ENST00000448038 TCTEX1D1Q8N7M0 179 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 KDF1Q8NAX2 398 aaPredicted RBP6.28□□□□□ -1.4
SYNE1-213ENST00000448038 OR9G1Q8NH87 305 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 ATP5SQ99766 215 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 SMIM7Q9BQ49 75 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 OR51I2Q9H344 312 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 GHITMQ9H3K2 345 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 PROK2Q9HC23 129 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 RCC2Q9P258 522 aaKnown RBP6.28□□□□□ -1.4
SYNE1-213ENST00000448038 IL36RNQ9UBH0 155 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 WASHC3Q9Y3C0 194 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 MED19A0JLT2 244 aaPredicted RBP6.28□□□□□ -1.4
SYNE1-213ENST00000448038 LEUTXA8MZ59 168 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 CD74P04233 296 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 ORM2P19652 201 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 EWSR1Q01844 656 aaKnown RBP eCLIP6.28□□□□□ -1.4
SYNE1-213ENST00000448038 PERPQ96FX8 193 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 NDFIP1Q9BT67 221 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 SH2D2AQ9NP31 389 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 GNG7O60262 68 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 FOXH1O75593 365 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 GNLYP22749 145 aa6.28□□□□□ -1.4
SYNE1-213ENST00000448038 AKR1C3P42330 323 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms