RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 DOK5Q9P104 306 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 RAP2CQ9Y3L5 183 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 COL4A1P02462 1669 aa2.15□□□□□ -2.07
CCDC88A-205ENST00000426576 TET2Q6N021 2002 aaPredicted RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 CENPVL1A0A0U1RR11 272 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 PINLYPA6NC86 204 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 GYG2O15488 501 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 GAS8-AS1O95177 125 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 MT-CO2P00403 227 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 ALPLP05186 524 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 SNRPAP09012 282 aaKnown RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 OR5G3P0C626 314 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM228BP0C875 321 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 CCR7P32248 378 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 GP5P40197 560 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 OPRL1P41146 370 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 AMTP48728 403 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 FOXG1P55316 489 aaPredicted RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 GRB2P62993 217 aaKnown RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 ALKBH1Q13686 389 aaKnown RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 Q3ZCU0 254 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 EMC4Q5J8M3 183 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 LYPD4Q6UWN0 246 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 ETV3LQ6ZN32 361 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 C1orf54Q8WWF1 131 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 RFKQ969G6 155 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 HAUS4Q9H6D7 363 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 EMC7Q9NPA0 242 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 RLIMQ9NVW2 624 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 DTLQ9NZJ0 730 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 MSRB1Q9NZV6 116 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 hCG_1818297A0A087WSY0 165 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 A8MT66 165 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF670-ZNF695F2Z2N8 137 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 OR2C1O95371 312 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 PMS2P2O95744 297 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 FAM153BP0C7A2 387 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 ORM2P19652 201 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 PPP1R8Q12972 351 aaKnown RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 GPR176Q14439 515 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 ZIC1Q15915 447 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 PCK2Q16822 640 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 RNASEKQ6P5S7 137 aaKnown RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 SPSB3Q6PJ21 355 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 LINC00471Q8N535 108 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF615Q8N8J6 731 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 FER1L6-AS1Q8NA97 138 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 OR5AP2Q8NGF4 316 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 GALMQ96C23 342 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 MS4A6EQ96DS6 147 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 TMEM101Q96IK0 257 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 SIGLEC11Q96RL6 698 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 AMELYQ99218 206 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 SLC29A1Q99808 456 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 CHST5Q9GZS9 411 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 C1orf109Q9NX04 203 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 BABAM2Q9NXR7 383 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF229Q9UJW7 825 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 KIAA2026Q5HYC2 2103 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 TRAV14DV4A0A0A6YYC5 116 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 SMIM31A0A1B0GVY4 71 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 TSPAN11A1L157 253 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 BUB1B-PAK6H3BSN5 160 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 LANCL1O43813 399 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 PLIN3O60664 434 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 HMGN2P05204 90 aaKnown RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 ACADSP16219 412 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 GPX3P22352 226 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 GATA2P23769 480 aaPredicted RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 CASP1P29466 404 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 GRIA1P42261 906 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 RPL35P42766 123 aaKnown RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 NDUFA8P51970 172 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 ELF3P78545 371 aaPredicted RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 AKR1C1Q04828 323 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 PIK3CD-AS1Q5SR53 167 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF613Q6PF04 617 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 SLC25A34Q6PIV7 304 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 SERPINA11Q86U17 422 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 MMD2Q8IY49 270 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 SLC37A3Q8NCC5 494 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 FCAMRQ8WWV6 532 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 SLC35A5Q9BS91 424 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 ALG12Q9BV10 488 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 INTS9Q9NV88 658 aaKnown RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF443Q9Y2A4 671 aaPredicted RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 NUBP2Q9Y5Y2 271 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 PLXNB2O15031 1838 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 SBF2Q86WG5 1849 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 ZNF593O00488 134 aaPredicted RBP2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 NBR2O15453 112 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 FGF16O43320 207 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 GTF2F2P13984 249 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 ARRB2P32121 409 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 PRCDQ00LT1 54 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 GAGE2BQ13066 116 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 AANATQ16613 207 aa2.14□□□□□ -2.07
CCDC88A-205ENST00000426576 GPR107Q5VW38 600 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms