RNA–Protein interactions for RNA: ENST00000425319.1

HLA-DQB3-203, Transcript of major histocompatibility complex, class II, DQ beta 3, humanhuman

BASIC

Gene HLA-DQB3, Length 356 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB3-203ENST00000425319 RPS16P62249 146 aaKnown RBP9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 ADARB1P78563 741 aaKnown RBP9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 CBX3Q13185 183 aa9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 ASPHD1Q5U4P2 390 aa9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 ZNF833PQ6ZTB9 187 aa9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 CBR4Q8N4T8 237 aa9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 NKAIN3Q8N8D7 197 aa9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 SETD6Q8TBK2 473 aa9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 PYDC1Q8WXC3 89 aa9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 RHOVQ96L33 236 aa9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 CLCC1Q96S66 551 aa9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 ALX4Q9H161 411 aaPredicted RBP9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 RIMS4Q9H426 269 aaPredicted RBP9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 BANF2Q9H503 90 aa9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 MBNL3Q9NUK0 354 aaKnown RBP9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 METTL1Q9UBP6 276 aaKnown RBP9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 ZNF221Q9UK13 617 aa9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 COL7A1Q02388 2944 aa9.46□□□□□ -0.9
HLA-DQB3-203ENST00000425319 A0A1W2PP11 408 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 H3BNX3 289 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 H3BUA1 57 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 SC5DO75845 299 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 IGLV1-51P01701 117 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 APOA2P02652 100 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 CPEP16870 476 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 IGFBP3P17936 291 aaPredicted RBP9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 CNTFRP26992 372 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 LGALS7P47929 136 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 LRRC36Q1X8D7 754 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 FAM131AQ6UXB0 335 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 GAPTQ8N292 157 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 LFNGQ8NES3 379 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 UQCC2Q9BRT2 126 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 C19orf73Q9NVV2 129 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 ZNF581Q9P0T4 197 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 PEMTQ9UBM1 199 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 AASSQ9UDR5 926 aa9.45□□□□□ -0.9
HLA-DQB3-203ENST00000425319 SAA2-SAA4A0A096LPE2 208 aa9.44□□□□□ -0.9
HLA-DQB3-203ENST00000425319 A0A0B4J203 849 aa9.44□□□□□ -0.9
HLA-DQB3-203ENST00000425319 BAG2O95816 211 aa9.44□□□□□ -0.9
HLA-DQB3-203ENST00000425319 LIMS3P0CW19 117 aa9.44□□□□□ -0.9
HLA-DQB3-203ENST00000425319 LIMS4P0CW20 117 aa9.44□□□□□ -0.9
HLA-DQB3-203ENST00000425319 SAA2P0DJI9 122 aaPredicted RBP9.44□□□□□ -0.9
HLA-DQB3-203ENST00000425319 GABRB1P18505 474 aa9.44□□□□□ -0.9
HLA-DQB3-203ENST00000425319 FSTP19883 344 aa9.44□□□□□ -0.9
HLA-DQB3-203ENST00000425319 ZBTB25P24278 435 aa9.44□□□□□ -0.9
HLA-DQB3-203ENST00000425319 MOB1BQ7L9L4 216 aa9.44□□□□□ -0.9
HLA-DQB3-203ENST00000425319 TMEM80Q96HE8 168 aa9.44□□□□□ -0.9
HLA-DQB3-203ENST00000425319 RITA1Q96K30 269 aa9.44□□□□□ -0.9
HLA-DQB3-203ENST00000425319 RDH12Q96NR8 316 aa9.44□□□□□ -0.9
HLA-DQB3-203ENST00000425319 SLC23A1Q9UHI7 598 aa9.44□□□□□ -0.9
HLA-DQB3-203ENST00000425319 TRBV5-5A0A0J9YX44 114 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 SPDEFO95238 335 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 OR3A3P47888 321 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 ETV1P50549 477 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 GNMTQ14749 295 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 FXYD3Q14802 87 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 OR2G6Q5TZ20 316 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 TTC23Q5W5X9 447 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 GLT8D1Q68CQ7 371 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 ODF3L1Q8IXM7 274 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 Q8N1Y9 231 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 Q8N402 240 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 MRPL30Q8TCC3 161 aaKnown RBP9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 RGP1Q92546 391 aaPredicted RBP9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 USMG5Q96IX5 58 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 Q96M66 194 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 SLC29A1Q99808 456 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 EDA2RQ9HAV5 297 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 TPSG1Q9NRR2 321 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 PLEKHJ1Q9NW61 149 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 SLC2A8Q9NY64 477 aa9.43□□□□□ -0.9
HLA-DQB3-203ENST00000425319 A0A1W2PPK0 400 aa9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 SHISA3A0PJX4 238 aa9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 ANKRD34BA5PLL1 514 aa9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 ITGB1BP1O14713 200 aa9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 AIREO43918 545 aa9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 CEACAM6P40199 344 aa9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 MRPS15P82914 257 aaKnown RBP9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 TAGLNQ01995 201 aaKnown RBP9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 HAGHQ16775 308 aa9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 RPEL1Q2QD12 228 aa9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 DMKNQ6E0U4 476 aaPredicted RBP9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 ADAMTSL5Q6ZMM2 481 aa9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 POC5Q8NA72 575 aa9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 SETD9Q8NE22 299 aa9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 OR9G4Q8NGQ1 327 aa9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 OR2K2Q8NGT1 345 aa9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 KCNG3Q8TAE7 436 aa9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 CASTOR1Q8WTX7 329 aa9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 SNAPC3Q92966 411 aa9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 FAM103A1Q9BTL3 118 aaKnown RBP9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 URM1Q9BTM9 101 aaKnown RBP9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 FAAP24Q9BTP7 215 aa9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 PEF1Q9UBV8 284 aaKnown RBP9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 DIMT1Q9UNQ2 313 aaKnown RBP9.42□□□□□ -0.9
HLA-DQB3-203ENST00000425319 H0YJW9 148 aa9.41□□□□□ -0.9
HLA-DQB3-203ENST00000425319 FCN1O00602 326 aa9.41□□□□□ -0.9
HLA-DQB3-203ENST00000425319 ST8SIA5O15466 376 aa9.41□□□□□ -0.9
HLA-DQB3-203ENST00000425319 SOX15O60248 233 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms