RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 VSIRQ9H7M9 311 aa9.33□□□□□ -0.92
LIMS1-207ENST00000422797 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.33□□□□□ -0.92
LIMS1-207ENST00000422797 PILRBQ9UKJ0 227 aa9.33□□□□□ -0.92
LIMS1-207ENST00000422797 TRAPPC2LQ9UL33 140 aa9.33□□□□□ -0.92
LIMS1-207ENST00000422797 TRAV9-1A0A075B6T8 112 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 TMEM210A6NLX4 147 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 HS3ST1O14792 307 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 SH2D1BO14796 132 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 ST8SIA5O15466 376 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 IGLV2-14P01704 120 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 RFPL3SP0C7P2 107 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 P0C879 139 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 RD3LP0DJH9 198 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 GZMBP10144 247 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 SELEP16581 610 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 IDH3GP51553 393 aaPredicted RBP9.32□□□□□ -0.92
LIMS1-207ENST00000422797 FGF8P55075 233 aaPredicted RBP9.32□□□□□ -0.92
LIMS1-207ENST00000422797 ELLP55199 621 aaPredicted RBP9.32□□□□□ -0.92
LIMS1-207ENST00000422797 COL10A1Q03692 680 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 MRPL49Q13405 166 aaKnown RBP9.32□□□□□ -0.92
LIMS1-207ENST00000422797 SSX2Q16385 188 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 PMS2CLQ68D20 193 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 C20orf204Q6ZNR8 217 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.32□□□□□ -0.92
LIMS1-207ENST00000422797 FGFRL1Q8N441 504 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 RPP25LQ8N5L8 163 aaKnown RBP9.32□□□□□ -0.92
LIMS1-207ENST00000422797 OR10P1Q8NGE3 313 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 OR10G9Q8NGN4 311 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 OR10G7Q8NGN6 311 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 MAFAQ8NHW3 353 aaPredicted RBP9.32□□□□□ -0.92
LIMS1-207ENST00000422797 IL1F10Q8WWZ1 152 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 RAB1CQ92928 201 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 TAAR6Q96RI8 345 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 PARLQ9H300 379 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 ZNF552Q9H707 407 aaPredicted RBP9.32□□□□□ -0.92
LIMS1-207ENST00000422797 KCNIP2Q9NS61 270 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 IL36RNQ9UBH0 155 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 SHANK1Q9Y566 2161 aa9.32□□□□□ -0.92
LIMS1-207ENST00000422797 FAM90A9PA6NNJ1 464 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 ZNF891A8MT65 544 aaPredicted RBP9.31□□□□□ -0.92
LIMS1-207ENST00000422797 A8MWP6 167 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 RAB29O14966 203 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 TMPRSS2O15393 492 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 MPDU1O75352 247 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 GYPAP02724 150 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 LHX2P50458 406 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 RPP30P78346 268 aaKnown RBP9.31□□□□□ -0.92
LIMS1-207ENST00000422797 ZNF146Q15072 292 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 C4orf17Q53FE4 359 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 CDPF1Q6NVV7 123 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 ZNF66Q6ZN08 573 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 SSX7Q7RTT5 188 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 MCEMP1Q8IX19 187 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 BATF2Q8N1L9 274 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 DRAM1Q8N682 238 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 FAM122AQ96E09 287 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 GMPPAQ96IJ6 420 aaPredicted RBP9.31□□□□□ -0.92
LIMS1-207ENST00000422797 GPHA2Q96T91 129 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 ZNF703Q9H7S9 590 aaPredicted RBP9.31□□□□□ -0.92
LIMS1-207ENST00000422797 GP6Q9HCN6 339 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 OR6C3Q9NZP0 311 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 OR1A1Q9P1Q5 309 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 PPP1R3CQ9UQK1 317 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 TMEM30CPA0ZSE6 113 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 LRRC30A6NM36 301 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 SLC33A1O00400 549 aaPredicted RBP9.31□□□□□ -0.92
LIMS1-207ENST00000422797 CLDN14O95500 239 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 CER1O95813 267 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 IGFBP4P22692 258 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 OTX2P32243 289 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 CLDN18P56856 261 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 SPCS3P61009 180 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 ERVK11-1P61568 191 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 GNB2P62879 340 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 SLC10A1Q14973 349 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 FFAR4Q5NUL3 377 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 DCAF12Q5T6F0 453 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 TRAT1Q6PIZ9 186 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 OR4F5Q8NH21 305 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 RPUSD4Q96CM3 377 aaKnown RBP9.31□□□□□ -0.92
LIMS1-207ENST00000422797 RHOVQ96L33 236 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 OR4F4Q96R69 305 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 PRRG4Q9BZD6 226 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 EML6Q6ZMW3 1958 aa9.31□□□□□ -0.92
LIMS1-207ENST00000422797 ARID1AO14497 2285 aa9.3□□□□□ -0.92
LIMS1-207ENST00000422797 A0A096LPE4 126 aa9.3□□□□□ -0.92
LIMS1-207ENST00000422797 A0A1W2PPZ6 126 aa9.3□□□□□ -0.92
LIMS1-207ENST00000422797 WDR1O75083 606 aa9.3□□□□□ -0.92
LIMS1-207ENST00000422797 OR2H2O95918 312 aa9.3□□□□□ -0.92
LIMS1-207ENST00000422797 CCL4P13236 92 aa9.3□□□□□ -0.92
LIMS1-207ENST00000422797 ZNF16P17020 682 aaPredicted RBP9.3□□□□□ -0.92
LIMS1-207ENST00000422797 TUBG1P23258 451 aa9.3□□□□□ -0.92
LIMS1-207ENST00000422797 PPP1CBP62140 327 aa9.3□□□□□ -0.92
LIMS1-207ENST00000422797 PLGLB1Q02325 96 aa9.3□□□□□ -0.92
LIMS1-207ENST00000422797 TBC1D28Q2M2D7 210 aa9.3□□□□□ -0.92
LIMS1-207ENST00000422797 PEAR1Q5VY43 1037 aaPredicted RBP9.3□□□□□ -0.92
LIMS1-207ENST00000422797 OR8G2PQ6IF36 304 aa9.3□□□□□ -0.92
LIMS1-207ENST00000422797 C6orf15Q6UXA7 325 aaPredicted RBP9.3□□□□□ -0.92
LIMS1-207ENST00000422797 OR2M7Q8NG81 312 aa9.3□□□□□ -0.92
LIMS1-207ENST00000422797 DTD1Q8TEA8 209 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms