RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 PHYHIPLQ96FC7 376 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.31□□□□□ -1.24
SYNE1-211ENST00000413186 CLN8Q9UBY8 286 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 NSG2Q9Y328 171 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 A0A0G2JNJ9 132 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 LGALS8O00214 317 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 GEMIN2O14893 280 aaKnown RBP7.31□□□□□ -1.24
SYNE1-211ENST00000413186 DUS4LO95620 317 aaKnown RBP7.31□□□□□ -1.24
SYNE1-211ENST00000413186 GNLYP22749 145 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 PIGPP57054 158 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 WBP1Q96G27 269 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 Q9UFV3 132 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 ZFHX4Q86UP3 3567 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 CEBPZOSA8MTT3 80 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 HSD17B6O14756 317 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 LY86O95711 162 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 BTF3P20290 206 aaKnown RBP7.31□□□□□ -1.24
SYNE1-211ENST00000413186 TAGLNQ01995 201 aaKnown RBP7.31□□□□□ -1.24
SYNE1-211ENST00000413186 FABP9Q0Z7S8 132 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 PDCD1Q15116 288 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 OR2B11Q5JQS5 317 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 RBMS3Q6XE24 437 aaKnown RBP7.31□□□□□ -1.24
SYNE1-211ENST00000413186 OR4A16Q8NH70 328 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 MARCH1Q8TCQ1 289 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 NEU4Q8WWR8 484 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-211ENST00000413186 C5orf42Q9H799 3197 aa7.31□□□□□ -1.24
SYNE1-211ENST00000413186 ATG2AQ2TAZ0 1938 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 FAM24AA6NFZ4 105 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 SMLR1H3BR10 107 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 MGST3O14880 152 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 ZG16O60844 167 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 SIX6O95475 246 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 CDS2O95674 445 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 OR13C7P0DN81 318 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 PRDX2P32119 198 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 CLEC12BQ2HXU8 276 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 ZNF485Q8NCK3 441 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 OR10Z1Q8NGY1 313 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 OR13C6PQ8NH95 151 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 MARC2Q969Z3 335 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 NABP1Q96AH0 204 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 NARFLQ9H6Q4 476 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 AMMECR1Q9Y4X0 333 aaPredicted RBP7.3□□□□□ -1.24
SYNE1-211ENST00000413186 PCNX1Q96RV3 2341 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 COL4A2P08572 1712 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 NKX2-6A6NCS4 301 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 CEACAM3P40198 252 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 GUCA2AQ02747 115 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 SNTB1Q13884 538 aaKnown RBP7.3□□□□□ -1.24
SYNE1-211ENST00000413186 SEZ6L2Q6UXD5 910 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 FOXL2NBQ6ZUU3 175 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 OR4S1Q8NGB4 309 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 OR5AP2Q8NGF4 316 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 OR13D1Q8NGV5 346 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 TINAGL1Q9GZM7 467 aaPredicted RBP7.3□□□□□ -1.24
SYNE1-211ENST00000413186 RCC2Q9P258 522 aaKnown RBP7.3□□□□□ -1.24
SYNE1-211ENST00000413186 STRAPQ9Y3F4 350 aaKnown RBP7.3□□□□□ -1.24
SYNE1-211ENST00000413186 NCOR2Q9Y618 2525 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 LOC107984156A0A0G2JMH3 177 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 F6UZH7 168 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 H7C2G1 150 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 GPR31O00270 319 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 BCL2L11O43521 198 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 OR5G3P0C626 314 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 PMCHP20382 165 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 CEACAM8P31997 349 aaPredicted RBP7.3□□□□□ -1.24
SYNE1-211ENST00000413186 PPP1CCP36873 323 aaKnown RBP7.3□□□□□ -1.24
SYNE1-211ENST00000413186 P2RY4P51582 365 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 C11orf87Q6NUJ2 197 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 ARL17AQ8IVW1 177 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 OR51H1Q8NH63 302 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 MRPL24Q96A35 216 aaKnown RBP7.3□□□□□ -1.24
SYNE1-211ENST00000413186 RSG1Q9BU20 258 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 ONECUT1Q9UBC0 465 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.3□□□□□ -1.24
SYNE1-211ENST00000413186 DBX1A6NMT0 343 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 IQCF6A8MYZ5 107 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 PIN1P1O15428 100 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 SOCS1O15524 211 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 SFT2D2O95562 160 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 DNAL4O96015 105 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 RNF224P0DH78 156 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 NKX2-1P43699 371 aaPredicted RBP7.3□□□□□ -1.24
SYNE1-211ENST00000413186 FAAP20Q6NZ36 180 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 GLCCI1Q86VQ1 547 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 TCTEX1D1Q8N7M0 179 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 OR5P3Q8WZ94 311 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 HEXA-AS1Q9H8Q6 139 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 COL6A3P12111 3177 aa7.3□□□□□ -1.24
SYNE1-211ENST00000413186 TRAV39A0A0B4J263 110 aa7.29□□□□□ -1.24
SYNE1-211ENST00000413186 A0A0B4J293 547 aa7.29□□□□□ -1.24
SYNE1-211ENST00000413186 TRDCB7Z8K6 153 aa7.29□□□□□ -1.24
SYNE1-211ENST00000413186 TCTAP57738 103 aa7.29□□□□□ -1.24
SYNE1-211ENST00000413186 CKS1BP61024 79 aa7.29□□□□□ -1.24
SYNE1-211ENST00000413186 DHRS2Q13268 280 aa7.29□□□□□ -1.24
SYNE1-211ENST00000413186 TMEM95Q3KNT9 176 aa7.29□□□□□ -1.24
SYNE1-211ENST00000413186 RTN4IP1Q8WWV3 396 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-211ENST00000413186 GNPNAT1Q96EK6 184 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-211ENST00000413186 C20orf24Q9BUV8 137 aa7.29□□□□□ -1.24
SYNE1-211ENST00000413186 KIAA1456Q9P272 454 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms