RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 FGF2P09038 288 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 SCTP09683 121 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 SLC25A16P16260 332 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 ZP3P21754 424 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 PRDX2P32119 198 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 ZNF146Q15072 292 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 TMEM155Q4W5P6 130 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 FIP1L1Q6UN15 594 aaKnown RBP11.13□□□□□ -0.63
LIMS1-204ENST00000409441 BAP18Q8IXM2 172 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 WFDC11Q8NEX6 87 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 GLYATL2Q8WU03 294 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 Q96MF0 132 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 NARFLQ9H6Q4 476 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 PLEKHA2Q9HB19 425 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 OR14J1Q9UGF5 321 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 TANC2Q9HCD6 1990 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 IGKV1D-17A0A075B6S4 117 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 C3orf85A0A1B0GTC6 90 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 MSGN1A6NI15 193 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 CYSRT1A8MQ03 144 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 A8MXK9 166 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 PHF1O43189 567 aaPredicted RBP11.13□□□□□ -0.63
LIMS1-204ENST00000409441 ZNF44P15621 663 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 GNRHRP30968 328 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 GABRA2P47869 451 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 HERPUD1Q15011 391 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 SP6Q3SY56 376 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 STUMQ69YW2 141 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 LYPD2Q6UXB3 125 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 GAPTQ8N292 157 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 CD177Q8N6Q3 437 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 CCL13Q99616 98 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 SLC5A7Q9GZV3 580 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 GLS2Q9UI32 602 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 NUP50Q9UKX7 468 aa11.13□□□□□ -0.63
LIMS1-204ENST00000409441 IGHV4-61A0A0C4DH41 118 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 IGKV1-6A0A0C4DH72 117 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 E5RGE8 158 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 HSPB6O14558 160 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 SH2D1BO14796 132 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 BET1O15155 118 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 FGF16O43320 207 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 WNT2P09544 360 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 HKR1P10072 659 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 S100GP29377 79 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 CEBPDP49716 269 aaPredicted RBP11.12□□□□□ -0.63
LIMS1-204ENST00000409441 LYZL2Q7Z4W2 148 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 BVESQ8NE79 360 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 SECTM1Q8WVN6 248 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 TMEM56Q96MV1 263 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 TMEM222Q9H0R3 208 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 NSG2Q9Y328 171 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 TMEM56-RWDD3S4R434 201 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 CSMD1Q96PZ7 3565 aa11.12□□□□□ -0.63
LIMS1-204ENST00000409441 RNF223E7ERA6 249 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 K7EPK0 472 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 SLC33A1O00400 549 aaPredicted RBP11.11□□□□□ -0.63
LIMS1-204ENST00000409441 TMPRSS2O15393 492 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 ADAM20O43506 726 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 CDS2O95674 445 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 HAND1O96004 215 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 USF1P22415 310 aaPredicted RBP11.11□□□□□ -0.63
LIMS1-204ENST00000409441 RPL12P30050 165 aaKnown RBP11.11□□□□□ -0.63
LIMS1-204ENST00000409441 FAM74A1Q5RGS3 127 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 EIF5AL1Q6IS14 154 aaKnown RBP11.11□□□□□ -0.63
LIMS1-204ENST00000409441 ZNF497Q6ZNH5 498 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 ZNF788Q6ZQV5 615 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 TBC1D26Q86UD7 250 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 CMTM1Q8IZ96 169 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 H1FOOQ8IZA3 346 aaPredicted RBP11.11□□□□□ -0.63
LIMS1-204ENST00000409441 FAM71E2Q8N5Q1 922 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 CLDND2Q8NHS1 167 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 IL22RA2Q969J5 263 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 SDSLQ96GA7 329 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 ABHD14BQ96IU4 210 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 KIRREL1Q96J84 757 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 TP53RKQ96S44 253 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 SPIN2AQ99865 258 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 SPIN2BQ9BPZ2 258 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 ZNF665Q9H7R5 613 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 SEBOXQ9HB31 216 aaPredicted RBP11.11□□□□□ -0.63
LIMS1-204ENST00000409441 MIOXQ9UGB7 285 aa11.11□□□□□ -0.63
LIMS1-204ENST00000409441 KCNAB3O43448 404 aa11.1□□□□□ -0.63
LIMS1-204ENST00000409441 OR2H2O95918 312 aa11.1□□□□□ -0.63
LIMS1-204ENST00000409441 GAPDHP04406 335 aaKnown RBP11.1□□□□□ -0.63
LIMS1-204ENST00000409441 UCP1P25874 307 aa11.1□□□□□ -0.63
LIMS1-204ENST00000409441 LMO4P61968 165 aa11.1□□□□□ -0.63
LIMS1-204ENST00000409441 COL10A1Q03692 680 aa11.1□□□□□ -0.63
LIMS1-204ENST00000409441 ZNRF1Q8ND25 227 aa11.1□□□□□ -0.63
LIMS1-204ENST00000409441 OR10J5Q8NHC4 309 aa11.1□□□□□ -0.63
LIMS1-204ENST00000409441 LHFPL5Q8TAF8 219 aa11.1□□□□□ -0.63
LIMS1-204ENST00000409441 RNF141Q8WVD5 230 aa11.1□□□□□ -0.63
LIMS1-204ENST00000409441 PATZ1Q9HBE1 687 aaKnown RBP11.1□□□□□ -0.63
LIMS1-204ENST00000409441 ZC4H2Q9NQZ6 224 aa11.1□□□□□ -0.63
LIMS1-204ENST00000409441 KAAG1Q9UBP8 84 aa11.1□□□□□ -0.63
LIMS1-204ENST00000409441 UBE2J1Q9Y385 318 aaPredicted RBP11.1□□□□□ -0.63
LIMS1-204ENST00000409441 OR2W1Q9Y3N9 320 aa11.1□□□□□ -0.63
LIMS1-204ENST00000409441 LSM5Q9Y4Y9 91 aaKnown RBP11.1□□□□□ -0.63
LIMS1-204ENST00000409441 NUDT19A8MXV4 375 aa11.09□□□□□ -0.63
LIMS1-204ENST00000409441 H0Y980 276 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms