RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 MBD3L1Q8WWY6 194 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 TAF15Q92804 592 aaKnown RBP eCLIP17.73■□□□□ 0.43
CTCF-202ENST00000401394 RAB40CQ96S21 281 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 PRDM14Q9GZV8 571 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 PITPNC1Q9UKF7 332 aa17.73■□□□□ 0.43
CTCF-202ENST00000401394 PMS2P11Q13670 270 aa17.72■□□□□ 0.43
CTCF-202ENST00000401394 BSXQ3C1V8 233 aa17.72■□□□□ 0.43
CTCF-202ENST00000401394 FGFRL1Q8N441 504 aa17.72■□□□□ 0.43
CTCF-202ENST00000401394 ICE1Q9Y2F5 2266 aa17.72■□□□□ 0.43
CTCF-202ENST00000401394 GJE1A6NN92 205 aa17.72■□□□□ 0.43
CTCF-202ENST00000401394 PAGE4O60829 102 aa17.72■□□□□ 0.43
CTCF-202ENST00000401394 CEACAM6P40199 344 aa17.72■□□□□ 0.43
CTCF-202ENST00000401394 WNT5AP41221 380 aa17.72■□□□□ 0.43
CTCF-202ENST00000401394 CASP6P55212 293 aa17.72■□□□□ 0.43
CTCF-202ENST00000401394 MEF2BQ02080 365 aaPredicted RBP17.72■□□□□ 0.43
CTCF-202ENST00000401394 TMEM241Q24JQ0 296 aa17.72■□□□□ 0.43
CTCF-202ENST00000401394 TPRX1Q8N7U7 411 aa17.72■□□□□ 0.43
CTCF-202ENST00000401394 Q8NFD4 153 aa17.72■□□□□ 0.43
CTCF-202ENST00000401394 OR2Y1Q8NGV0 311 aa17.72■□□□□ 0.43
CTCF-202ENST00000401394 A8MWP6 167 aa17.71■□□□□ 0.43
CTCF-202ENST00000401394 G0S2P27469 103 aa17.71■□□□□ 0.43
CTCF-202ENST00000401394 RPL30P62888 115 aaKnown RBP17.71■□□□□ 0.43
CTCF-202ENST00000401394 FAM58AQ8N1B3 248 aa17.71■□□□□ 0.43
CTCF-202ENST00000401394 TRAPPC2LQ9UL33 140 aa17.71■□□□□ 0.43
CTCF-202ENST00000401394 OPN1MWP04001 364 aa17.71■□□□□ 0.43
CTCF-202ENST00000401394 OPN1MW2P0DN77 364 aa17.71■□□□□ 0.43
CTCF-202ENST00000401394 OPN1MW3P0DN78 364 aa17.71■□□□□ 0.43
CTCF-202ENST00000401394 JOSD1Q15040 202 aaPredicted RBP17.71■□□□□ 0.43
CTCF-202ENST00000401394 TMEM41BQ5BJD5 291 aa17.71■□□□□ 0.43
CTCF-202ENST00000401394 OR1L1Q8NH94 360 aa17.71■□□□□ 0.43
CTCF-202ENST00000401394 B4DEV8 164 aa17.7■□□□□ 0.42
CTCF-202ENST00000401394 DEGS1O15121 323 aa17.7■□□□□ 0.42
CTCF-202ENST00000401394 FGF5P12034 268 aa17.7■□□□□ 0.42
CTCF-202ENST00000401394 MRGPRGQ86SM5 289 aa17.7■□□□□ 0.42
CTCF-202ENST00000401394 WDR86Q86TI4 376 aa17.7■□□□□ 0.42
CTCF-202ENST00000401394 DRAM1Q8N682 238 aa17.7■□□□□ 0.42
CTCF-202ENST00000401394 C5orf30Q96GV9 206 aa17.7■□□□□ 0.42
CTCF-202ENST00000401394 H7BYZ3 331 aa17.7■□□□□ 0.42
CTCF-202ENST00000401394 NUBP1P53384 320 aa17.7■□□□□ 0.42
CTCF-202ENST00000401394 Q6ZS49 121 aa17.7■□□□□ 0.42
CTCF-202ENST00000401394 TCF23Q7RTU1 214 aa17.7■□□□□ 0.42
CTCF-202ENST00000401394 TMEM256Q8N2U0 113 aa17.7■□□□□ 0.42
CTCF-202ENST00000401394 A0A0U1RQK1 487 aa17.7■□□□□ 0.42
CTCF-202ENST00000401394 ZG16O60844 167 aa17.7■□□□□ 0.42
CTCF-202ENST00000401394 RNPS1Q15287 305 aaKnown RBP17.7■□□□□ 0.42
CTCF-202ENST00000401394 WDR54Q9H977 334 aa17.7■□□□□ 0.42
CTCF-202ENST00000401394 PCSK5Q92824 1860 aa17.69■□□□□ 0.42
CTCF-202ENST00000401394 IGHV3-13P01766 116 aa17.69■□□□□ 0.42
CTCF-202ENST00000401394 IGHV3-7P01780 117 aa17.69■□□□□ 0.42
CTCF-202ENST00000401394 CXCL12P48061 93 aa17.69■□□□□ 0.42
CTCF-202ENST00000401394 PNRC1Q12796 327 aaPredicted RBP17.69■□□□□ 0.42
CTCF-202ENST00000401394 ZNF114Q8NC26 417 aa17.69■□□□□ 0.42
CTCF-202ENST00000401394 WDYHV1Q96HA8 205 aa17.69■□□□□ 0.42
CTCF-202ENST00000401394 CBLN4Q9NTU7 201 aa17.69■□□□□ 0.42
CTCF-202ENST00000401394 FOLR3P41439 243 aa17.69■□□□□ 0.42
CTCF-202ENST00000401394 LYSMD4Q5XG99 296 aa17.69■□□□□ 0.42
CTCF-202ENST00000401394 NUFIP2Q7Z417 695 aaKnown RBP17.69■□□□□ 0.42
CTCF-202ENST00000401394 PPP1R32Q7Z5V6 425 aa17.69■□□□□ 0.42
CTCF-202ENST00000401394 SNIP1Q8TAD8 396 aaKnown RBP17.69■□□□□ 0.42
CTCF-202ENST00000401394 SRD5A3Q9H8P0 318 aa17.69■□□□□ 0.42
CTCF-202ENST00000401394 NAT8Q9UHE5 227 aa17.69■□□□□ 0.42
CTCF-202ENST00000401394 PPP5D1E7EU14 171 aa17.68■□□□□ 0.42
CTCF-202ENST00000401394 CELA3BP08861 270 aa17.68■□□□□ 0.42
CTCF-202ENST00000401394 OR10G4Q8NGN3 311 aa17.68■□□□□ 0.42
CTCF-202ENST00000401394 ABHD14BQ96IU4 210 aa17.68■□□□□ 0.42
CTCF-202ENST00000401394 UBE2ZQ9H832 354 aaPredicted RBP17.68■□□□□ 0.42
CTCF-202ENST00000401394 CDIPTO14735 213 aa17.68■□□□□ 0.42
CTCF-202ENST00000401394 MT-CO3P00414 261 aa17.68■□□□□ 0.42
CTCF-202ENST00000401394 GFRA1P56159 465 aa17.68■□□□□ 0.42
CTCF-202ENST00000401394 TEX38Q6PEX7 206 aa17.68■□□□□ 0.42
CTCF-202ENST00000401394 SPEM1Q8N4L4 309 aa17.68■□□□□ 0.42
CTCF-202ENST00000401394 ZNF391Q9UJN7 358 aa17.68■□□□□ 0.42
CTCF-202ENST00000401394 IGHV3-43A0A0B4J1X8 118 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 TRAV38-1A0A0B4J264 116 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 DEFB108AA8MXU0 73 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 OR2H2O95918 312 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 IFNA10P01566 189 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 IGHV3-43DP0DP04 118 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 TAS2R60P59551 318 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 RIPPLY2Q5TAB7 128 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 DPPA3Q6W0C5 159 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 TMEM105Q8N8V8 129 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 TMEM242Q9NWH2 141 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 MAP1BP46821 2468 aaKnown RBP17.67■□□□□ 0.42
CTCF-202ENST00000401394 ST8SIA5O15466 376 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 LTC4SQ16873 150 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 OR52L2PQ8NGH6 319 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 OR10G9Q8NGN4 311 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 OR10G7Q8NGN6 311 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 MAFAQ8NHW3 353 aaPredicted RBP17.67■□□□□ 0.42
CTCF-202ENST00000401394 DUSP23Q9BVJ7 150 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 TMEM9BQ9NQ34 198 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 DUXBA0A1W2PPF3 345 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 KBTBD11O94819 623 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 MAGEA5P43359 124 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 LPAL2Q16609 132 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 FFAR4Q5NUL3 377 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 FAM78BQ5VT40 261 aa17.67■□□□□ 0.42
CTCF-202ENST00000401394 MRPL41Q8IXM3 137 aaKnown RBP17.67■□□□□ 0.42
CTCF-202ENST00000401394 RAB24Q969Q5 203 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms