RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 MORN2Q502X0 79 aa22.51■■□□□ 1.19
HMGB1-205ENST00000399494 SLC25A48Q6ZT89 311 aaKnown RBP22.51■■□□□ 1.19
HMGB1-205ENST00000399494 ZNF439Q8NDP4 499 aa22.51■■□□□ 1.19
HMGB1-205ENST00000399494 B9D2Q9BPU9 175 aa22.51■■□□□ 1.19
HMGB1-205ENST00000399494 Q9N2K0 584 aa22.51■■□□□ 1.19
HMGB1-205ENST00000399494 ETV7Q9Y603 341 aa22.51■■□□□ 1.19
HMGB1-205ENST00000399494 MFNGO00587 321 aa22.5■■□□□ 1.19
HMGB1-205ENST00000399494 SCGNO76038 276 aa22.5■■□□□ 1.19
HMGB1-205ENST00000399494 GAPDHP04406 335 aaKnown RBP22.5■■□□□ 1.19
HMGB1-205ENST00000399494 CD69Q07108 199 aa22.5■■□□□ 1.19
HMGB1-205ENST00000399494 DIAPH2-AS1Q14236 149 aa22.5■■□□□ 1.19
HMGB1-205ENST00000399494 ARL6IP1Q15041 203 aa22.5■■□□□ 1.19
HMGB1-205ENST00000399494 OR8H3Q8N146 312 aa22.5■■□□□ 1.19
HMGB1-205ENST00000399494 KCNK7Q9Y2U2 307 aa22.5■■□□□ 1.19
HMGB1-205ENST00000399494 RYR3Q15413 4870 aa22.5■■□□□ 1.19
HMGB1-205ENST00000399494 SERPINE3A8MV23 424 aa22.49■■□□□ 1.19
HMGB1-205ENST00000399494 YPEL1O60688 119 aa22.49■■□□□ 1.19
HMGB1-205ENST00000399494 SNRNP70P08621 437 aaKnown RBP22.49■■□□□ 1.19
HMGB1-205ENST00000399494 RPL23AP62750 156 aaKnown RBP22.49■■□□□ 1.19
HMGB1-205ENST00000399494 CT45A1Q5HYN5 189 aa22.49■■□□□ 1.19
HMGB1-205ENST00000399494 STEAP3Q658P3 488 aa22.49■■□□□ 1.19
HMGB1-205ENST00000399494 C18orf65Q6ZTR6 163 aa22.49■■□□□ 1.19
HMGB1-205ENST00000399494 OR56B4Q8NH76 319 aa22.49■■□□□ 1.19
HMGB1-205ENST00000399494 CT45A3Q8NHU0 189 aa22.49■■□□□ 1.19
HMGB1-205ENST00000399494 DPF1Q92782 380 aa22.49■■□□□ 1.19
HMGB1-205ENST00000399494 YPEL2Q96QA6 119 aa22.49■■□□□ 1.19
HMGB1-205ENST00000399494 ABHD14AQ9BUJ0 271 aa22.49■■□□□ 1.19
HMGB1-205ENST00000399494 RHBDL2Q9NX52 303 aa22.49■■□□□ 1.19
HMGB1-205ENST00000399494 A0A1W2PPI3 338 aa22.48■■□□□ 1.19
HMGB1-205ENST00000399494 TMEM127O75204 238 aa22.48■■□□□ 1.19
HMGB1-205ENST00000399494 TALDO1P37837 337 aa22.48■■□□□ 1.19
HMGB1-205ENST00000399494 RPS19P39019 145 aaKnown RBP22.48■■□□□ 1.19
HMGB1-205ENST00000399494 REG1BP48304 166 aa22.48■■□□□ 1.19
HMGB1-205ENST00000399494 SERPINB10P48595 397 aa22.48■■□□□ 1.19
HMGB1-205ENST00000399494 ZNF134P52741 427 aa22.48■■□□□ 1.19
HMGB1-205ENST00000399494 ZNF816Q0VGE8 651 aaPredicted RBP22.48■■□□□ 1.19
HMGB1-205ENST00000399494 MOB3BQ86TA1 216 aa22.48■■□□□ 1.19
HMGB1-205ENST00000399494 DRAM1Q8N682 238 aa22.48■■□□□ 1.19
HMGB1-205ENST00000399494 CHPT1Q8WUD6 406 aa22.48■■□□□ 1.19
HMGB1-205ENST00000399494 NOL4LQ96MY1 436 aaPredicted RBP22.48■■□□□ 1.19
HMGB1-205ENST00000399494 HSPA12AO43301 675 aa22.47■■□□□ 1.19
HMGB1-205ENST00000399494 C5orf56Q8N8D9 126 aa22.47■■□□□ 1.19
HMGB1-205ENST00000399494 OR2AK2Q8NG84 335 aa22.47■■□□□ 1.19
HMGB1-205ENST00000399494 OR5H6Q8NGV6 325 aa22.47■■□□□ 1.19
HMGB1-205ENST00000399494 WWC2-AS2Q96NR7 200 aa22.47■■□□□ 1.19
HMGB1-205ENST00000399494 MCRIP2Q9BUT9 160 aaKnown RBP22.47■■□□□ 1.19
HMGB1-205ENST00000399494 ZFP57Q9NU63 452 aa22.47■■□□□ 1.19
HMGB1-205ENST00000399494 IGHV1-3A0A0C4DH29 117 aa22.46■■□□□ 1.19
HMGB1-205ENST00000399494 FCGR3AP08637 254 aa22.46■■□□□ 1.19
HMGB1-205ENST00000399494 VBP1P61758 197 aa22.46■■□□□ 1.19
HMGB1-205ENST00000399494 NCS1P62166 190 aa22.46■■□□□ 1.19
HMGB1-205ENST00000399494 HES1Q14469 280 aa22.46■■□□□ 1.19
HMGB1-205ENST00000399494 CDNFQ49AH0 187 aa22.46■■□□□ 1.19
HMGB1-205ENST00000399494 SLC23A1Q9UHI7 598 aa22.46■■□□□ 1.19
HMGB1-205ENST00000399494 TRDCB7Z8K6 153 aa22.45■■□□□ 1.18
HMGB1-205ENST00000399494 SCTP09683 121 aa22.45■■□□□ 1.18
HMGB1-205ENST00000399494 ZBTB25P24278 435 aa22.45■■□□□ 1.18
HMGB1-205ENST00000399494 MYCNOSP40205 109 aa22.45■■□□□ 1.18
HMGB1-205ENST00000399494 C8orf86Q6ZUL3 223 aa22.45■■□□□ 1.18
HMGB1-205ENST00000399494 GPR141Q7Z602 305 aa22.45■■□□□ 1.18
HMGB1-205ENST00000399494 TGIF2LXQ8IUE1 241 aa22.45■■□□□ 1.18
HMGB1-205ENST00000399494 RTN4IP1Q8WWV3 396 aaPredicted RBP22.45■■□□□ 1.18
HMGB1-205ENST00000399494 P2RX4Q99571 388 aa22.45■■□□□ 1.18
HMGB1-205ENST00000399494 TXNL1O43396 289 aa22.44■■□□□ 1.18
HMGB1-205ENST00000399494 SLC6A1P30531 599 aa22.44■■□□□ 1.18
HMGB1-205ENST00000399494 KIR2DS1Q14954 304 aa22.44■■□□□ 1.18
HMGB1-205ENST00000399494 LY6G6FQ5SQ64 297 aa22.44■■□□□ 1.18
HMGB1-205ENST00000399494 ST6GALNAC6Q969X2 333 aa22.44■■□□□ 1.18
HMGB1-205ENST00000399494 LINC00527Q9UJ94 153 aa22.44■■□□□ 1.18
HMGB1-205ENST00000399494 SPATA2Q9UM82 520 aa22.44■■□□□ 1.18
HMGB1-205ENST00000399494 FGF16O43320 207 aa22.43■■□□□ 1.18
HMGB1-205ENST00000399494 GSTP1P09211 210 aaKnown RBP22.43■■□□□ 1.18
HMGB1-205ENST00000399494 TMEM11P17152 192 aa22.43■■□□□ 1.18
HMGB1-205ENST00000399494 ZNF137PP52743 207 aa22.43■■□□□ 1.18
HMGB1-205ENST00000399494 HNF4GQ14541 408 aa22.43■■□□□ 1.18
HMGB1-205ENST00000399494 GPR107Q5VW38 600 aa22.43■■□□□ 1.18
HMGB1-205ENST00000399494 ANKRD13BQ86YJ7 626 aa22.43■■□□□ 1.18
HMGB1-205ENST00000399494 SLC25A38Q96DW6 304 aa22.43■■□□□ 1.18
HMGB1-205ENST00000399494 OR1A1Q9P1Q5 309 aa22.43■■□□□ 1.18
HMGB1-205ENST00000399494 IGKV1D-33P01593 117 aa22.42■■□□□ 1.18
HMGB1-205ENST00000399494 IGKV1-33P01594 117 aa22.42■■□□□ 1.18
HMGB1-205ENST00000399494 IGHG2P01859 326 aa22.42■■□□□ 1.18
HMGB1-205ENST00000399494 CEACAM6P40199 344 aa22.42■■□□□ 1.18
HMGB1-205ENST00000399494 HACD4Q5VWC8 232 aa22.42■■□□□ 1.18
HMGB1-205ENST00000399494 OR4A4PQ8NGN8 299 aa22.42■■□□□ 1.18
HMGB1-205ENST00000399494 MAFIPQ8WZ33 124 aa22.42■■□□□ 1.18
HMGB1-205ENST00000399494 SLC25A46Q96AG3 418 aa22.42■■□□□ 1.18
HMGB1-205ENST00000399494 ZNF230Q9UIE0 474 aaPredicted RBP22.42■■□□□ 1.18
HMGB1-205ENST00000399494 ELF5Q9UKW6 265 aaPredicted RBP22.42■■□□□ 1.18
HMGB1-205ENST00000399494 IGHV3-72A0A0B4J1Y9 119 aa22.41■■□□□ 1.18
HMGB1-205ENST00000399494 NUDT19A8MXV4 375 aa22.41■■□□□ 1.18
HMGB1-205ENST00000399494 FABP7O15540 132 aa22.41■■□□□ 1.18
HMGB1-205ENST00000399494 GNG2P59768 71 aa22.41■■□□□ 1.18
HMGB1-205ENST00000399494 COMMD1Q8N668 190 aa22.41■■□□□ 1.18
HMGB1-205ENST00000399494 EDARADDQ8WWZ3 215 aa22.41■■□□□ 1.18
HMGB1-205ENST00000399494 NAA50Q9GZZ1 169 aaKnown RBP22.41■■□□□ 1.18
HMGB1-205ENST00000399494 DIABLOQ9NR28 239 aa22.41■■□□□ 1.18
HMGB1-205ENST00000399494 TMEM235A6NFC5 223 aa22.4■■□□□ 1.18
HMGB1-205ENST00000399494 LINC01548A6NM66 108 aa22.4■■□□□ 1.18
HMGB1-205ENST00000399494 ST8SIA5O15466 376 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms