RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 OR13C4Q8NGS5 318 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 OR1S1Q8NH92 325 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 MFSD8Q8NHS3 518 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 ITLN1Q8WWA0 313 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 AURKBQ96GD4 344 aaPredicted RBP3.07□□□□□ -1.92
HMGB1-204ENST00000399489 SPACA5Q96QH8 159 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 OR52B2Q96RD2 323 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 CHCHD5Q9BSY4 110 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 EFCAB11Q9BUY7 163 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 CISHQ9NSE2 258 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 DHRS4-AS1Q9P1J3 65 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 FLVCR1Q9Y5Y0 555 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 MYO5BQ9ULV0 1848 aa3.07□□□□□ -1.92
HMGB1-204ENST00000399489 RGPD1P0DJD0 1748 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 WDR81Q562E7 1941 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 ADGRB2O60241 1585 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 IQGAP3Q86VI3 1631 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 TNS3Q68CZ2 1445 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 YTHDC2Q9H6S0 1430 aaKnown RBP3.06□□□□□ -1.92
HMGB1-204ENST00000399489 CROCC2H7BZ55 1655 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 RREB1Q92766 1687 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 NOTCH3Q9UM47 2321 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 A0A087X002 238 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 IGKV1-8A0A0C4DH67 115 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 A0A1W2PRE2 83 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 CIB4A0PJX0 185 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 FAM183AA6NL82 134 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 MFSD11O43934 449 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 ZNF253O75346 499 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 GCM2O75603 506 aaPredicted RBP3.06□□□□□ -1.92
HMGB1-204ENST00000399489 ARL6IP5O75915 188 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 KBTBD11O94819 623 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 CHTF8P0CG12 524 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 MDH2P40926 338 aaKnown RBP3.06□□□□□ -1.92
HMGB1-204ENST00000399489 PSMB2P49721 201 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 SYNJ2BPP57105 145 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 MRPS10P82664 201 aaKnown RBP3.06□□□□□ -1.92
HMGB1-204ENST00000399489 EMX1Q04741 257 aaPredicted RBP3.06□□□□□ -1.92
HMGB1-204ENST00000399489 C1DQ13901 141 aaKnown RBP3.06□□□□□ -1.92
HMGB1-204ENST00000399489 OR8G1Q15617 311 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 TAF9Q16594 264 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 C6orf99Q4VX62 202 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 ZNF684Q5T5D7 378 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 C1orf158Q8N1D5 194 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 LINC00337Q8N6G1 96 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 ZNF614Q8N883 585 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 OR10G4Q8NGN3 311 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 OR2K2Q8NGT1 345 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 GALMQ96C23 342 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 RPUSD4Q96CM3 377 aaKnown RBP3.06□□□□□ -1.92
HMGB1-204ENST00000399489 ZNF184Q99676 751 aaPredicted RBP3.06□□□□□ -1.92
HMGB1-204ENST00000399489 C19orf24Q9BVV8 132 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 Q9H3A6 140 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 ZDHHC11Q9H8X9 412 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 SLC25A22Q9H936 323 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 SLCO1B3Q9NPD5 702 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 HES2Q9Y543 173 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 YTHDF2Q9Y5A9 579 aaKnown RBP3.06□□□□□ -1.92
HMGB1-204ENST00000399489 NWD2Q9ULI1 1742 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 NEXMIFQ5QGS0 1516 aa3.06□□□□□ -1.92
HMGB1-204ENST00000399489 RRBP1Q9P2E9 1410 aaKnown RBP3.06□□□□□ -1.92
HMGB1-204ENST00000399489 TEX50A0A1B0GTY4 177 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 OR5H1A6NKK0 313 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 A8MXK9 166 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 H3BP45 60 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 FFAR1O14842 300 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 DEGS1O15121 323 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 TCF21O43680 179 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 GADD45GO95257 159 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 CA2P00918 260 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 PRTN3P24158 256 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 S100A11P31949 105 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 SLC18A1P54219 525 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 KRTAP10-12P60413 245 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 NCALDP61601 193 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 RAP1AP62834 184 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 CXCL6P80162 114 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 CDK5Q00535 292 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 RUNX3Q13761 415 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 Q499Y3 187 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 LRRC10Q5BKY1 277 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 AKR1C8PQ5T2L2 129 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 RSBN1Q5VWQ0 802 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-204ENST00000399489 SCIMPQ6UWF3 145 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 ZNF493Q6ZR52 646 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 CTAGE3PQ8IX95 158 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 FAM24BQ8N5W8 94 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 ZNF420Q8TAQ5 688 aaPredicted RBP3.05□□□□□ -1.92
HMGB1-204ENST00000399489 GNPDA2Q8TDQ7 276 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 BORCS7Q96B45 105 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 NARS2Q96I59 477 aaKnown RBP3.05□□□□□ -1.92
HMGB1-204ENST00000399489 BMFQ96LC9 184 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 PRSS27Q9BQR3 290 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 SFXN3Q9BWM7 321 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 SLC17A9Q9BYT1 436 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 SLC25A31Q9H0C2 315 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 PLSCR3Q9NRY6 295 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 CTSZQ9UBR2 303 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 HSPB8Q9UJY1 196 aa3.05□□□□□ -1.92
HMGB1-204ENST00000399489 DNAJC12Q9UKB3 198 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms