RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 TRAF3IP2O43734 574 aaPredicted RBP9.49□□□□□ -0.89
CUX1-204ENST00000393824 HRASP01112 189 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 SP1P08047 785 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 MAGEA5P43359 124 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 B3GALT5-AS1P59052 145 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 ERVS71-1P61550 626 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 MYBPHQ13203 477 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 BSXQ3C1V8 233 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 WIPI1Q5MNZ9 446 aaPredicted RBP9.49□□□□□ -0.89
CUX1-204ENST00000393824 MEX3BQ6ZN04 569 aaKnown RBP9.49□□□□□ -0.89
CUX1-204ENST00000393824 ZNF705AQ6ZN79 300 aaPredicted RBP9.49□□□□□ -0.89
CUX1-204ENST00000393824 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.49□□□□□ -0.89
CUX1-204ENST00000393824 EXTL1Q92935 676 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 MIEN1Q9BRT3 115 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 PCGF1Q9BSM1 259 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 TTTY12Q9BZ98 90 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 ELL3Q9HB65 397 aaPredicted RBP9.49□□□□□ -0.89
CUX1-204ENST00000393824 FUT9Q9Y231 359 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 DUXBA0A1W2PPF3 345 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 E9PLN8 166 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 RER1O15258 196 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 CNN1P51911 297 aaKnown RBP9.49□□□□□ -0.89
CUX1-204ENST00000393824 ZNF154Q13106 437 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 ADIRFQ15847 76 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 RAET1LQ5VY80 246 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 LEMD1Q68G75 181 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 IGFL2Q6UWQ7 119 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 LYZL4Q96KX0 146 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 SMIM7Q9BQ49 75 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 MAGT1Q9H0U3 335 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 ZNF703Q9H7S9 590 aaPredicted RBP9.49□□□□□ -0.89
CUX1-204ENST00000393824 DNAJC4Q9NNZ3 241 aa9.49□□□□□ -0.89
CUX1-204ENST00000393824 USP24Q9UPU5 2620 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 KBTBD11O94819 623 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 IL6RP08887 468 aaPredicted RBP9.48□□□□□ -0.89
CUX1-204ENST00000393824 PAX9P55771 341 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 CLDN15P56746 228 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 RPL23P62829 140 aaKnown RBP9.48□□□□□ -0.89
CUX1-204ENST00000393824 HIST1H3AP68431 136 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 ZNF92Q03936 586 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 ZNF726P1Q15940 193 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 MRGPRDQ8TDS7 321 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 ANAPC16Q96DE5 110 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 REPIN1Q9BWE0 567 aaKnown RBP9.48□□□□□ -0.89
CUX1-204ENST00000393824 SH3BGRL2Q9UJC5 107 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 ZFP30Q9Y2G7 519 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 NBASA2RRP1 2371 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 EPG5Q9HCE0 2579 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 MAP1LC3B2A6NCE7 125 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 K7ENP7 123 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 K7EP13 123 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 TRAPPC6AO75865 159 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 TNFSF13O75888 250 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 IFNA1P01562 189 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 IFNA5P01569 189 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 TUBG1P23258 451 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 CDAP32320 146 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 MEOX1P50221 254 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 DSCR4P56555 118 aaPredicted RBP9.48□□□□□ -0.89
CUX1-204ENST00000393824 NMSQ5H8A3 153 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 ZNF766Q5HY98 468 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 INO80CQ6PI98 192 aaPredicted RBP9.48□□□□□ -0.89
CUX1-204ENST00000393824 SSX7Q7RTT5 188 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 ZNF695Q8IW36 515 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 SELENOHQ8IZQ5 122 aaKnown RBP9.48□□□□□ -0.89
CUX1-204ENST00000393824 TMEM251Q8N6I4 163 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 GJC3Q8NFK1 279 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 NUDT10Q8NFP7 164 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 OR2T10Q8NGZ9 312 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 SPSB1Q96BD6 273 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 PSMG3Q9BT73 122 aaPredicted RBP9.48□□□□□ -0.89
CUX1-204ENST00000393824 MAP1LC3BQ9GZQ8 125 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 SEPSECSQ9HD40 501 aaKnown RBP9.48□□□□□ -0.89
CUX1-204ENST00000393824 PLSCR2Q9NRY7 297 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 DKK4Q9UBT3 224 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 RNF115Q9Y4L5 304 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 ZFYVE26Q68DK2 2539 aa9.48□□□□□ -0.89
CUX1-204ENST00000393824 ADGRG4Q8IZF6 3080 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 CEBPZOSA8MTT3 80 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 ADAM20O43506 726 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 CHST1O43916 411 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 GDF1P27539 372 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 SRP14P37108 136 aaKnown RBP9.47□□□□□ -0.89
CUX1-204ENST00000393824 GUCA1AP43080 201 aaPredicted RBP9.47□□□□□ -0.89
CUX1-204ENST00000393824 LCN2P80188 198 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 OR5I1Q13606 314 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 LCN15Q6UWW0 184 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 ASCL4Q6XD76 172 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 FOXL2NBQ6ZUU3 175 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 NECAP1Q8NC96 275 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 Q8NFD4 153 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 PLPPR1Q8TBJ4 325 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 WFIKKN1Q96NZ8 548 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 TBX15Q96SF7 602 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 FAM173AQ9BQD7 235 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 ZNF286AQ9HBT8 521 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 ABI3Q9P2A4 366 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 C5orf63A6NC05 138 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 TMEM250H0YL14 139 aa9.47□□□□□ -0.89
CUX1-204ENST00000393824 YPEL1O60688 119 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms