RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 OR4D5Q8NGN0 318 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 SNIP1Q8TAD8 396 aaKnown RBP8.2□□□□□ -1.1
COL6A3-204ENST00000392003 IL1F10Q8WWZ1 152 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 TMEM56Q96MV1 263 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 TMEM56-RWDD3S4R434 201 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 ADAM20O43506 726 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 OPN1MWP04001 364 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 SFTA3P0C7M3 94 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 OR8U9P0C7N5 309 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 OPN1MW2P0DN77 364 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 OPN1MW3P0DN78 364 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 VDAC1P21796 283 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 HLA-DRB3P79483 266 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 EWSR1Q01844 656 aaKnown RBP eCLIP8.2□□□□□ -1.1
COL6A3-204ENST00000392003 Q6ZVH6 145 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 C17orf78Q8N4C9 275 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 ZADH2Q8N4Q0 377 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 ABHD14BQ96IU4 210 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 GINS3Q9BRX5 216 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 PLEKHF2Q9H8W4 249 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 LRP5LA4QPB2 252 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 FAM24AA6NFZ4 105 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 KLK10O43240 276 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 SSSCA1O60232 199 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 TUSC2O75896 110 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 SNRNP70P08621 437 aaKnown RBP8.2□□□□□ -1.1
COL6A3-204ENST00000392003 SPINK2P20155 84 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 MDH2P40926 338 aaKnown RBP8.2□□□□□ -1.1
COL6A3-204ENST00000392003 PPP1CBP62140 327 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 HMGN3Q15651 99 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 SSX7Q7RTT5 188 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 MRPL30Q8TCC3 161 aaKnown RBP8.2□□□□□ -1.1
COL6A3-204ENST00000392003 EIF5A2Q9GZV4 153 aaKnown RBP8.2□□□□□ -1.1
COL6A3-204ENST00000392003 TUBA4BQ9H853 241 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 DLL3Q9NYJ7 618 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 SPRR3Q9UBC9 169 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 KPTNQ9Y664 436 aa8.2□□□□□ -1.1
COL6A3-204ENST00000392003 ZNF318Q5VUA4 2279 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 KMT2EQ8IZD2 1858 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 OMGP23515 440 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 UCP1P25874 307 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 TCF15Q12870 199 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 MIDNQ504T8 468 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 RNFT1Q5M7Z0 435 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 MOB1BQ7L9L4 216 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 STXBP6Q8NFX7 210 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 MRGPRDQ8TDS7 321 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 PBDC1Q9BVG4 233 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 MAGT1Q9H0U3 335 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 ARV1Q9H2C2 271 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 PLSCR4Q9NRQ2 329 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 OR2W1Q9Y3N9 320 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 SPTA1P02549 2419 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 IGKV1D-13A0A0B4J2D9 117 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 TNFSF12O43508 249 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 DANCRP0C864 163 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 IGKV1-13P0DP09 117 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 CEACAM1P13688 526 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 DAZAP2Q15038 168 aaPredicted RBP8.19□□□□□ -1.1
COL6A3-204ENST00000392003 ST6GALNAC3Q8NDV1 305 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 OR8U1Q8NH10 309 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 OR51I2Q9H344 312 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 ERRFI1Q9UJM3 462 aaPredicted RBP8.19□□□□□ -1.1
COL6A3-204ENST00000392003 TRAPPC2LQ9UL33 140 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 TRBV6-6A0A0A6YYG2 114 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 H0Y980 276 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 M0QZK8 103 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 SIRPB1O00241 398 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 LILRA1O75019 489 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 METTL15P1P0C7V9 234 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 ID4P47928 161 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 TLE4Q04727 773 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 HERPUD1Q15011 391 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 SLC35E3Q7Z769 313 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 OR5D13Q8NGL4 314 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 OR51H1Q8NH63 302 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 FAM213BQ8TBF2 198 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 IL22RA2Q969J5 263 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 SARAFQ96BY9 339 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 WFDC1Q9HC57 220 aa8.19□□□□□ -1.1
COL6A3-204ENST00000392003 TRAV24A0A0B4J272 114 aa8.18□□□□□ -1.1
COL6A3-204ENST00000392003 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.18□□□□□ -1.1
COL6A3-204ENST00000392003 A0A1W2PPE2 198 aa8.18□□□□□ -1.1
COL6A3-204ENST00000392003 C9JQL5 133 aa8.18□□□□□ -1.1
COL6A3-204ENST00000392003 GZMBP10144 247 aa8.18□□□□□ -1.1
COL6A3-204ENST00000392003 EPHA1P21709 976 aa8.18□□□□□ -1.1
COL6A3-204ENST00000392003 RIPPLY3P57055 190 aa8.18□□□□□ -1.1
COL6A3-204ENST00000392003 TMEM182Q6ZP80 229 aaPredicted RBP8.18□□□□□ -1.1
COL6A3-204ENST00000392003 HIST3H2BBQ8N257 126 aa8.18□□□□□ -1.1
COL6A3-204ENST00000392003 PRSS33Q8NF86 280 aa8.18□□□□□ -1.1
COL6A3-204ENST00000392003 OR10V1Q8NGI7 309 aa8.18□□□□□ -1.1
COL6A3-204ENST00000392003 GPHA2Q96T91 129 aa8.18□□□□□ -1.1
COL6A3-204ENST00000392003 ALKBH7Q9BT30 221 aaPredicted RBP8.18□□□□□ -1.1
COL6A3-204ENST00000392003 ZDHHC11Q9H8X9 412 aa8.18□□□□□ -1.1
COL6A3-204ENST00000392003 KCNS2Q9ULS6 477 aa8.18□□□□□ -1.1
COL6A3-204ENST00000392003 TNRC6AQ8NDV7 1962 aaKnown RBP8.18□□□□□ -1.1
COL6A3-204ENST00000392003 LOC105371242A0A075B767 164 aa8.18□□□□□ -1.1
COL6A3-204ENST00000392003 A0A1W2PR80 420 aa8.18□□□□□ -1.1
COL6A3-204ENST00000392003 NKX6-3A6NJ46 265 aa8.18□□□□□ -1.1
COL6A3-204ENST00000392003 SH2D1BO14796 132 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms