RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 TSPOP30536 169 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 P2RY6Q15077 328 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 FAM216AQ8WUB2 273 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 SGK494Q96LW2 274 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 A0A1W2PPE3 182 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 AMY1AP04745 511 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 C9orf40Q8IXQ3 194 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 ZNF721Q8TF20 911 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 HIST1H4GQ99525 98 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 CYB5R3P00387 301 aaPredicted RBP11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 CFDP00746 253 aaPredicted RBP11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 FGF12P61328 243 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 SGMS2Q8NHU3 365 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 B4E171 279 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 NDUFA2O43678 99 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 TSPAN7P41732 249 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 CXCL3P19876 107 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 NSUN5P2Q63ZY6 315 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 RGP1Q92546 391 aaPredicted RBP11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 CCL13Q99616 98 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 MIOXQ9UGB7 285 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 KLK13Q9UKR3 277 aa11.11□□□□□ -0.63
CCDC88C-204ENST00000389857 MFAP4P55083 255 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 DLX6P56179 175 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 PLPPR5Q32ZL2 321 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 TMEM70Q9BUB7 260 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 DSPPQ9NZW4 1301 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 MMP16P51512 607 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 SPATA45Q537H7 98 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 EID2BQ96D98 161 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 AHRRA9YTQ3 701 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 RPL8P62917 257 aaKnown RBP11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 REC114Q7Z4M0 266 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 MMD2Q8IY49 270 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 DUX5Q96PT3 197 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 TRAF4Q9BUZ4 470 aaPredicted RBP11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 IGKV3D-15A0A087WSY6 115 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 IGKV3-15P01624 115 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 GFRA1P56159 465 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 ATP5G2Q06055 141 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 PLXNB2O15031 1838 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 PMCHL1Q16048 86 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 OR8G5Q8NG78 346 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 OR4D11Q8NGI4 311 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 TRAV8-7A0A075B6U6 113 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 OR2A4O95047 310 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 LINC00869P0C866 280 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 ANOS1P23352 680 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 CX3CL1P78423 397 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 PCSK4Q6UW60 755 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 OR2A7Q96R45 310 aa11.1□□□□□ -0.63
CCDC88C-204ENST00000389857 SMCHD1A6NHR9 2005 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 HRKO00198 91 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 C12orf54Q6X4T0 127 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 A0A0B4J293 547 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 GAGE10A6NGK3 116 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 MGAT2Q10469 447 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 C1orf53Q5VUE5 145 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 ZNF430Q9H8G1 570 aaPredicted RBP11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 AURKAIP1Q9NWT8 199 aaPredicted RBP11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 CCL8P80075 99 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 RELQ04864 619 aaPredicted RBP11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 FAM27BQ5VT28 67 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 UNQ5815/PRO19632Q6UWF5 114 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 FAM219BQ5XKK7 198 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 RBKSQ9H477 322 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 TRAV39A0A0B4J263 110 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 hCG_38984A0A1B0GV85 526 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 CGB1A6NKQ9 187 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 PRSS27Q9BQR3 290 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 HDHD3Q9BSH5 251 aaPredicted RBP11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 IDI2-AS1Q9NZ38 188 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 NUP214P35658 2090 aaPredicted RBP11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 SPAARA0A1B0GVQ0 90 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 PRR33A8MZF0 331 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 TFF2Q03403 129 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 OPN3Q9H1Y3 402 aaPredicted RBP11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 WBP1LQ9NX94 342 aa11.09□□□□□ -0.63
CCDC88C-204ENST00000389857 HLA-DQA1P01909 254 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 CD1AP06126 327 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 VAX1Q5SQQ9 334 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 TMEM45BQ96B21 275 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 QSER1Q2KHR3 1735 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 LINC00862A6NCI5 91 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM209AQ5JX71 171 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 IGHV1-45A0A0A0MS14 117 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 NPFFO15130 113 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 PLP1P60201 277 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 MEIG1Q5JSS6 88 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 MCM3APO60318 1980 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 TTC32Q5I0X7 151 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 FAM214BQ7L5A3 538 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 BHLHA9Q7RTU4 235 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 TCF21O43680 179 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 FGF11Q92914 225 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 PGLYRP4Q96LB8 373 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 MIXL1Q9H2W2 232 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 ST6GALNAC2Q9UJ37 374 aa11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 MARF1Q9Y4F3 1742 aaKnown RBP11.08□□□□□ -0.64
CCDC88C-204ENST00000389857 FBLL1A6NHQ2 334 aaKnown RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms