RNA–Protein interactions for RNA: ENST00000373006.5

USP49-201, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 1 (best) BASIC

Gene USP49, Length 3,177 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-201ENST00000373006 CLDN23Q96B33 292 aa11.64□□□□□ -0.55
USP49-201ENST00000373006 DNAJC4Q9NNZ3 241 aa11.64□□□□□ -0.55
USP49-201ENST00000373006 GTF3C1Q12789 2109 aa11.64□□□□□ -0.55
USP49-201ENST00000373006 IGHV5-10-1A0A0J9YXX1 117 aa11.64□□□□□ -0.55
USP49-201ENST00000373006 TRAPPC2LH3BP13 241 aa11.64□□□□□ -0.55
USP49-201ENST00000373006 IFNA1P01562 189 aa11.64□□□□□ -0.55
USP49-201ENST00000373006 IGKV1-5P01602 117 aa11.64□□□□□ -0.55
USP49-201ENST00000373006 S100GP29377 79 aa11.64□□□□□ -0.55
USP49-201ENST00000373006 TRIM61Q5EBN2 209 aa11.64□□□□□ -0.55
USP49-201ENST00000373006 CLEC2AQ6UVW9 174 aa11.64□□□□□ -0.55
USP49-201ENST00000373006 Q6ZS49 121 aa11.64□□□□□ -0.55
USP49-201ENST00000373006 OR4F5Q8NH21 305 aa11.64□□□□□ -0.55
USP49-201ENST00000373006 ABHD3Q8WU67 409 aa11.64□□□□□ -0.55
USP49-201ENST00000373006 DNASE2BQ8WZ79 361 aa11.64□□□□□ -0.55
USP49-201ENST00000373006 OR4F4Q96R69 305 aa11.64□□□□□ -0.55
USP49-201ENST00000373006 WDR61Q9GZS3 305 aaKnown RBP11.64□□□□□ -0.55
USP49-201ENST00000373006 ZNF391Q9UJN7 358 aa11.64□□□□□ -0.55
USP49-201ENST00000373006 GPR179Q6PRD1 2367 aa11.64□□□□□ -0.55
USP49-201ENST00000373006 ZNF716A6NP11 495 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 TNFSF10P50591 281 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 FAM3BP58499 235 aaPredicted RBP11.63□□□□□ -0.55
USP49-201ENST00000373006 ZNF324BQ6AW86 544 aaPredicted RBP11.63□□□□□ -0.55
USP49-201ENST00000373006 CYP2G1PQ6ZSU1 146 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.63□□□□□ -0.55
USP49-201ENST00000373006 CADM4Q8NFZ8 388 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 MRPL30Q8TCC3 161 aaKnown RBP11.63□□□□□ -0.55
USP49-201ENST00000373006 PARLQ9H300 379 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 GPR35Q9HC97 309 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 PARD6AQ9NPB6 346 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 FKBP11Q9NYL4 201 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 R4GN57 208 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 SSR4P51571 173 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 HBG1P69891 147 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 HBG2P69892 147 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 SERF2P84101 59 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 KRTAP27-1Q3LI81 207 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 ADGRG7Q96K78 797 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 C5orf49A4QMS7 147 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 WDR1O75083 606 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 CBR3O75828 277 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 KBTBD11O94819 623 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 RFPL3SP0C7P2 107 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 RAB4AP20338 218 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 VHLLQ6RSH7 139 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 MKXQ8IYA7 352 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 OR10V1Q8NGI7 309 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 PSMF1Q92530 271 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 TAF15Q92804 592 aaKnown RBP eCLIP11.63□□□□□ -0.55
USP49-201ENST00000373006 ZNF845Q96IR2 970 aaPredicted RBP11.63□□□□□ -0.55
USP49-201ENST00000373006 PSMG3Q9BT73 122 aaPredicted RBP11.63□□□□□ -0.55
USP49-201ENST00000373006 SF3B5Q9BWJ5 86 aaKnown RBP11.63□□□□□ -0.55
USP49-201ENST00000373006 PATZ1Q9HBE1 687 aaKnown RBP11.63□□□□□ -0.55
USP49-201ENST00000373006 RNF150Q9ULK6 438 aa11.63□□□□□ -0.55
USP49-201ENST00000373006 CTXN2P0C2S0 81 aa11.62□□□□□ -0.55
USP49-201ENST00000373006 PMP22Q01453 160 aa11.62□□□□□ -0.55
USP49-201ENST00000373006 RNPS1Q15287 305 aaKnown RBP11.62□□□□□ -0.55
USP49-201ENST00000373006 MRPL14Q6P1L8 145 aaKnown RBP11.62□□□□□ -0.55
USP49-201ENST00000373006 RNASE8Q8TDE3 154 aaKnown RBP11.62□□□□□ -0.55
USP49-201ENST00000373006 PYGO2Q9BRQ0 406 aa11.62□□□□□ -0.55
USP49-201ENST00000373006 ZNF552Q9H707 407 aaPredicted RBP11.62□□□□□ -0.55
USP49-201ENST00000373006 KCNS2Q9ULS6 477 aa11.62□□□□□ -0.55
USP49-201ENST00000373006 GCGP01275 180 aa11.62□□□□□ -0.55
USP49-201ENST00000373006 CHRNA7P36544 502 aa11.62□□□□□ -0.55
USP49-201ENST00000373006 PCBD1P61457 104 aa11.62□□□□□ -0.55
USP49-201ENST00000373006 IQCJQ1A5X6 159 aa11.62□□□□□ -0.55
USP49-201ENST00000373006 ACSM6Q6P461 480 aa11.62□□□□□ -0.55
USP49-201ENST00000373006 OR10D3Q8NH80 312 aa11.62□□□□□ -0.55
USP49-201ENST00000373006 TMEM18Q96B42 140 aa11.62□□□□□ -0.55
USP49-201ENST00000373006 C1QTNF5Q9BXJ0 243 aa11.62□□□□□ -0.55
USP49-201ENST00000373006 OR51B6Q9H340 312 aa11.62□□□□□ -0.55
USP49-201ENST00000373006 CLDN1O95832 211 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 NGFP01138 241 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 EGR1P18146 543 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 PSMB3P49720 205 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 SLC38A11Q08AI6 406 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 WIPI1Q5MNZ9 446 aaPredicted RBP11.61□□□□□ -0.55
USP49-201ENST00000373006 RPS19BP1Q86WX3 136 aaKnown RBP11.61□□□□□ -0.55
USP49-201ENST00000373006 Q8NFD4 153 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 OR51I2Q9H344 312 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 ADAMTS20P59510 1910 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 IGHV1-45A0A0A0MS14 117 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 GRIFINA4D1Z8 144 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 IGLV2-14P01704 120 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 ERVFC1-1P60608 527 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 MRPL21Q7Z2W9 205 aaKnown RBP11.61□□□□□ -0.55
USP49-201ENST00000373006 GGNQ86UU5 652 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 TMEM170AQ8WVE7 144 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 ZPBPQ9BS86 351 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 FAM90A10PA6NDY2 464 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 FAM90A18PA6NE21 464 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 FAM90A16PA6NEW6 464 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 FAM90A20PA6NIJ5 464 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 FAM90A8PA6NJQ4 464 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 FAM90A7PA6NKC0 464 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 FAM90A22PA8MWA6 464 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 FAM90A12PA8MX19 464 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 FAM90A5PA8MXJ8 464 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 FAM90A23PA8MXZ1 464 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 HRASP01112 189 aa11.61□□□□□ -0.55
USP49-201ENST00000373006 FAM90A15PP0C7V4 464 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms