RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 POLR2GP62487 172 aaKnown RBP eCLIP8.45□□□□□ -1.06
CUX1-203ENST00000360264 SCMH1Q96GD3 660 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 TRAV34A0A0B4J273 112 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 RPL36A-HNRNPH2H7BZ11 118 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 MAS1LP35410 378 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 PDCD1Q15116 288 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 WDFY1Q8IWB7 410 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 TMEFF2Q9UIK5 374 aaPredicted RBP8.45□□□□□ -1.06
CUX1-203ENST00000360264 PHLDA3Q9Y5J5 127 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 CRHP06850 196 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 ANKRD20A5PA0PJZ0 165 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 NAAAQ02083 359 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 ZIC1Q15915 447 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 LHX8Q68G74 356 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 TCF24Q7RTU0 167 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 TIMP4Q99727 224 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 FOXD3Q9UJU5 478 aaPredicted RBP8.45□□□□□ -1.06
CUX1-203ENST00000360264 R4GN57 208 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 SMIM6P0DI80 62 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 TEPPQ6URK8 271 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 QTRT1Q9BXR0 403 aaKnown RBP8.45□□□□□ -1.06
CUX1-203ENST00000360264 YBX2Q9Y2T7 364 aaKnown RBP8.45□□□□□ -1.06
CUX1-203ENST00000360264 FAM3BP58499 235 aaPredicted RBP8.45□□□□□ -1.06
CUX1-203ENST00000360264 GVQW1Q8N7I0 195 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 PAXXQ9BUH6 204 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 WIPI2Q9Y4P8 454 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 HBZP02008 142 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 TMEM45BQ96B21 275 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 RALGAPA2Q2PPJ7 1873 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 MMP16P51512 607 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 LINC01555Q8NAE3 123 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 PARP11Q9NR21 331 aa8.45□□□□□ -1.06
CUX1-203ENST00000360264 LRRK2Q5S007 2527 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 TTRP02766 147 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 FAM157CP0CG43 387 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 MFAP4P55083 255 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 PSG9Q00887 426 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 BSXQ3C1V8 233 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 MRPL54Q6P161 138 aaKnown RBP8.44□□□□□ -1.06
CUX1-203ENST00000360264 LILRA6Q6PI73 481 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 C12orf54Q6X4T0 127 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 FRRS1LQ9P0K9 344 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 BCL2P10415 239 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 MMD2Q8IY49 270 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 PRDX2P32119 198 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 CKS2P33552 79 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 ZNF645Q8N7E2 425 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 NRIP2Q9BQI9 281 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 H3BQ15 152 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 HLA-DQA1P01909 254 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 SNRPD3P62318 126 aaKnown RBP8.44□□□□□ -1.06
CUX1-203ENST00000360264 IFITM10A6NMD0 228 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 FAM90A26D6RGX4 464 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 SERGEFQ9UGK8 458 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 PEX11BO96011 259 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 CCL2P13500 99 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 MDP1Q86V88 176 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 ZNF646O15015 1829 aaPredicted RBP8.44□□□□□ -1.06
CUX1-203ENST00000360264 CCL3P10147 92 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 GGTLC2Q14390 218 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 H1FOOQ8IZA3 346 aaPredicted RBP8.44□□□□□ -1.06
CUX1-203ENST00000360264 ZNF502Q8TBZ5 544 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 C16orf92Q96LL3 132 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 RSG1Q9BU20 258 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 J3QR06 171 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 RNF133Q8WVZ7 376 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 PPIAL4EA0A075B759 164 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 PPIAL4DF5H284 164 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 PPIAL4FP0DN26 164 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 TMEM255AQ5JRV8 349 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 LDLRAD3Q86YD5 345 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 PPIAL4AQ9Y536 164 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 SEZ6L2Q6UXD5 910 aa8.44□□□□□ -1.06
CUX1-203ENST00000360264 CLDN14O95500 239 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 NUDT3O95989 172 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 LGALS3P17931 250 aaKnown RBP8.43□□□□□ -1.06
CUX1-203ENST00000360264 ATP5G2Q06055 141 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 SGMS2Q8NHU3 365 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 TRBV9A0A0B4J1U6 114 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 COL10A1Q03692 680 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 SFXN3Q9BWM7 321 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 TMEM30AQ9NV96 361 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 OPN4Q9UHM6 478 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 LINC00869P0C866 280 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 HINT1P49773 126 aaPredicted RBP8.43□□□□□ -1.06
CUX1-203ENST00000360264 KIAA0040Q15053 153 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 LSM10Q969L4 123 aaKnown RBP8.43□□□□□ -1.06
CUX1-203ENST00000360264 NPIPB8E9PQR5 432 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 IER3P46695 156 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 VAX1Q5SQQ9 334 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 XAF1Q6GPH4 301 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 MYEOVQ96EZ4 313 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 DPH3Q96FX2 82 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 PRELID3AQ96N28 172 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 OR4C12Q96R67 309 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 C19orf24Q9BVV8 132 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 ZNF385DQ9H6B1 395 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 LEUTXA8MZ59 168 aa8.43□□□□□ -1.06
CUX1-203ENST00000360264 RPLP1P05386 114 aaKnown RBP8.43□□□□□ -1.06
CUX1-203ENST00000360264 PRSS2P07478 247 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms