RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 RPRMLQ8N4K4 120 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 CD177Q8N6Q3 437 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 ZNF525Q8N782 197 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 KIAA1456Q9P272 454 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 PROCRQ9UNN8 238 aa12.93□□□□□ -0.34
UPF3B-202ENST00000345865 KLF2Q9Y5W3 355 aaPredicted RBP12.93□□□□□ -0.34
UPF3B-202ENST00000345865 IGHV3-43A0A0B4J1X8 118 aa12.92□□□□□ -0.34
UPF3B-202ENST00000345865 OR5H1A6NKK0 313 aa12.92□□□□□ -0.34
UPF3B-202ENST00000345865 IGHV3-43DP0DP04 118 aa12.92□□□□□ -0.34
UPF3B-202ENST00000345865 GCH1P30793 250 aa12.92□□□□□ -0.34
UPF3B-202ENST00000345865 G6PCP35575 357 aa12.92□□□□□ -0.34
UPF3B-202ENST00000345865 KRBOX4Q5JUW0 171 aa12.92□□□□□ -0.34
UPF3B-202ENST00000345865 BTNL3Q6UXE8 466 aa12.92□□□□□ -0.34
UPF3B-202ENST00000345865 BHLHA15Q7RTS1 189 aaPredicted RBP12.92□□□□□ -0.34
UPF3B-202ENST00000345865 C15orf54Q8N8G6 183 aa12.92□□□□□ -0.34
UPF3B-202ENST00000345865 KDF1Q8NAX2 398 aaPredicted RBP12.92□□□□□ -0.34
UPF3B-202ENST00000345865 RFESDQ8TAC1 157 aa12.92□□□□□ -0.34
UPF3B-202ENST00000345865 SLC25A15Q9Y619 301 aa12.92□□□□□ -0.34
UPF3B-202ENST00000345865 RIF1Q5UIP0 2472 aaKnown RBP12.92□□□□□ -0.34
UPF3B-202ENST00000345865 A0A1B0GWJ7 208 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 C17orf98A8MV24 154 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 KRASP01116 189 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 P0C879 139 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 EGR1P18146 543 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 ZNF816Q0VGE8 651 aaPredicted RBP12.91□□□□□ -0.34
UPF3B-202ENST00000345865 ICAM4Q14773 271 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 SPRNQ5BIV9 151 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 SPANXN5Q5MJ07 72 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 TOLLIPQ9H0E2 274 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 RPRMQ9NS64 109 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 MMP24Q9Y5R2 645 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 IFNA5P01569 189 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 ARG1P05089 322 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 SRP19P09132 144 aaKnown RBP12.91□□□□□ -0.34
UPF3B-202ENST00000345865 PLA2G5P39877 138 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 UBE2KP61086 200 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 HABP2Q14520 560 aaPredicted RBP12.91□□□□□ -0.34
UPF3B-202ENST00000345865 SOHLH1Q5JUK2 328 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 ALKBH2Q6NS38 261 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 IGF2-ASQ6U949 168 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 LRRC29Q8WV35 223 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 HIPK2Q9H2X6 1198 aa12.91□□□□□ -0.34
UPF3B-202ENST00000345865 PUS1Q9Y606 427 aaKnown RBP eCLIP12.91□□□□□ -0.34
UPF3B-202ENST00000345865 A0A1W2PPH5 198 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 MBD3L4A6NDZ8 208 aaPredicted RBP12.9□□□□□ -0.34
UPF3B-202ENST00000345865 BTBD17A6NE02 478 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 MBD3L3A6NE82 208 aaPredicted RBP12.9□□□□□ -0.34
UPF3B-202ENST00000345865 MBD3L5A6NJ08 208 aaPredicted RBP12.9□□□□□ -0.34
UPF3B-202ENST00000345865 DEFB108AA8MXU0 73 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 ATXN7O15265 892 aaPredicted RBP12.9□□□□□ -0.34
UPF3B-202ENST00000345865 S1PR2O95136 353 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 FOLR2P14207 255 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 P2RY6Q15077 328 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 ZNF726P1Q15940 193 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 SLC25A24Q6NUK1 477 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 SSX7Q7RTT5 188 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 LINC00518Q8N0U6 118 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 OR2Z1Q8NG97 314 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 CLDND2Q8NHS1 167 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 MBD3L2Q8NHZ7 208 aaPredicted RBP12.9□□□□□ -0.34
UPF3B-202ENST00000345865 SMDT1Q9H4I9 107 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 ICE1Q9Y2F5 2266 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 A0A1W2PPE2 198 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 RNF212BA8MTL3 300 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 IFNL4K9M1U5 179 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 SCAF4O95104 1147 aaKnown RBP12.9□□□□□ -0.34
UPF3B-202ENST00000345865 TUBG1P23258 451 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 TNFRSF9Q07011 255 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 ZBTB34Q8NCN2 500 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 RBKSQ9H477 322 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 TUBG2Q9NRH3 451 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 COA4Q9NYJ1 87 aa12.9□□□□□ -0.34
UPF3B-202ENST00000345865 LINC00473A8K010 186 aa12.89□□□□□ -0.35
UPF3B-202ENST00000345865 TLE4Q04727 773 aa12.89□□□□□ -0.35
UPF3B-202ENST00000345865 SMIM21Q3B7S5 101 aa12.89□□□□□ -0.35
UPF3B-202ENST00000345865 ZNF474Q6S9Z5 364 aaPredicted RBP12.89□□□□□ -0.35
UPF3B-202ENST00000345865 OR4C12Q96R67 309 aa12.89□□□□□ -0.35
UPF3B-202ENST00000345865 TUBA4BQ9H853 241 aa12.89□□□□□ -0.35
UPF3B-202ENST00000345865 DUSP13Q9UII6 198 aa12.89□□□□□ -0.35
UPF3B-202ENST00000345865 FAM215AQ9Y5M1 114 aa12.89□□□□□ -0.35
UPF3B-202ENST00000345865 RP1L1Q8IWN7 2480 aaPredicted RBP12.89□□□□□ -0.35
UPF3B-202ENST00000345865 ODAMA1E959 279 aa12.89□□□□□ -0.35
UPF3B-202ENST00000345865 ZNF891A8MT65 544 aaPredicted RBP12.89□□□□□ -0.35
UPF3B-202ENST00000345865 C15orf65H3BRN8 121 aa12.89□□□□□ -0.35
UPF3B-202ENST00000345865 PPIHO43447 177 aaKnown RBP12.89□□□□□ -0.35
UPF3B-202ENST00000345865 ZNF737O75373 536 aa12.89□□□□□ -0.35
UPF3B-202ENST00000345865 ZNF83P51522 516 aa12.89□□□□□ -0.35
UPF3B-202ENST00000345865 LRRC75BQ2VPJ9 315 aa12.89□□□□□ -0.35
UPF3B-202ENST00000345865 ZNF506Q5JVG8 444 aa12.89□□□□□ -0.35
UPF3B-202ENST00000345865 ZADH2Q8N4Q0 377 aa12.89□□□□□ -0.35
UPF3B-202ENST00000345865 AGMATQ9BSE5 352 aa12.89□□□□□ -0.35
UPF3B-202ENST00000345865 HSPB7Q9UBY9 170 aa12.89□□□□□ -0.35
UPF3B-202ENST00000345865 IGKV1D-17A0A075B6S4 117 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 K7EM74 188 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 TM4SF5O14894 197 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 ST8SIA5O15466 376 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 CD55P08174 381 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 PRDX2P32119 198 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 CEBPGP53567 150 aa12.88□□□□□ -0.35
UPF3B-202ENST00000345865 EDDM3AQ14507 147 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms