RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 OR11L1Q8NGX0 322 aa6.96□□□□□ -1.3
ATG4A-201ENST00000343524 SF3B5Q9BWJ5 86 aaKnown RBP6.96□□□□□ -1.3
ATG4A-201ENST00000343524 GNB1LQ9BYB4 327 aa6.96□□□□□ -1.3
ATG4A-201ENST00000343524 LIME1Q9H400 295 aa6.96□□□□□ -1.3
ATG4A-201ENST00000343524 NRN1Q9NPD7 142 aa6.96□□□□□ -1.3
ATG4A-201ENST00000343524 KCNIP2Q9NS61 270 aa6.96□□□□□ -1.3
ATG4A-201ENST00000343524 TMEM74BQ9NUR3 256 aa6.96□□□□□ -1.3
ATG4A-201ENST00000343524 TP53TG3Q9ULZ0 132 aa6.96□□□□□ -1.3
ATG4A-201ENST00000343524 RNF24Q9Y225 148 aa6.96□□□□□ -1.3
ATG4A-201ENST00000343524 MUC22E2RYF6 1773 aaPredicted RBP6.96□□□□□ -1.3
ATG4A-201ENST00000343524 IGKV1-9A0A0C4DH69 117 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 GJE1A6NN92 205 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 METTL12A8MUP2 240 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 DHRS3O75911 302 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 TMEM50AO95807 157 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 COX5AP20674 150 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 LINC00310P59036 64 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 ZNF90Q03938 601 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 CNN3Q15417 329 aaKnown RBP6.95□□□□□ -1.3
ATG4A-201ENST00000343524 TESK1Q15569 626 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 PSG3Q16557 428 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 SRSF7Q16629 238 aaKnown RBP eCLIP6.95□□□□□ -1.3
ATG4A-201ENST00000343524 TMEM211Q6ICI0 200 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 FAM180AQ6UWF9 173 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 Q6ZS49 121 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 CALHM1Q8IU99 346 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 ZIC4Q8N9L1 334 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 OR10P1Q8NGE3 313 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 OR4S2Q8NH73 311 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 PLPPR1Q8TBJ4 325 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 ABHD3Q8WU67 409 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 TAF15Q92804 592 aaKnown RBP eCLIP6.95□□□□□ -1.3
ATG4A-201ENST00000343524 VSIRQ9H7M9 311 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 PRTFDC1Q9NRG1 225 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 IL36BQ9NZH7 164 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 PEF1Q9UBV8 284 aaKnown RBP6.95□□□□□ -1.3
ATG4A-201ENST00000343524 TRAV9-2A0A087WT02 112 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 A0A1B0GUS0 222 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 FRG2CA6NGY1 282 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 A6NJY4 79 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 AQP7P3A6NL99 342 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 C11orf94C9JXX5 98 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 ZNF324O75467 553 aaPredicted RBP6.95□□□□□ -1.3
ATG4A-201ENST00000343524 WNT2P09544 360 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 PSG1P11464 419 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 IL12BP29460 328 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 PAX9P55771 341 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 TMEM267Q0VDI3 215 aaPredicted RBP6.95□□□□□ -1.3
ATG4A-201ENST00000343524 ZNF77Q15935 545 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 TMEM249Q2WGJ8 235 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 HLA-BQ31612 363 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 PRSS41Q7RTY9 318 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.95□□□□□ -1.3
ATG4A-201ENST00000343524 VASH2Q86V25 355 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 BATF2Q8N1L9 274 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 SLC39A11Q8N1S5 342 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 Q8NFD4 153 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 OR10G8Q8NGN5 311 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 FLVCR1-AS1Q8TAF5 88 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 BAHD1Q8TBE0 780 aaPredicted RBP6.95□□□□□ -1.3
ATG4A-201ENST00000343524 KLHDC7BQ96G42 594 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 HDHD3Q9BSH5 251 aaPredicted RBP6.95□□□□□ -1.3
ATG4A-201ENST00000343524 STRADBQ9C0K7 418 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 MEGF9Q9H1U4 602 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 CCL26Q9Y258 94 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 HCFC2Q9Y5Z7 792 aa6.95□□□□□ -1.3
ATG4A-201ENST00000343524 TRAV34A0A0B4J273 112 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 AHRRA9YTQ3 701 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 M0R1X1 148 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 FCN1O00602 326 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 IGLV3-1P01715 115 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 CTSBP07858 339 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 CISD3P0C7P0 127 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 ADH5P11766 374 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 BIDP55957 195 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 PAX2Q02962 417 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 RBPJQ06330 500 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 CFAP161Q6P656 301 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 PRSS57Q6UWY2 283 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 ASCL4Q6XD76 172 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 GTF2H5Q6ZYL4 71 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 H1FNTQ75WM6 255 aaPredicted RBP6.94□□□□□ -1.3
ATG4A-201ENST00000343524 RNF144BQ7Z419 303 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 OOSP2Q86WS3 158 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 LSM10Q969L4 123 aaKnown RBP6.94□□□□□ -1.3
ATG4A-201ENST00000343524 ZNF837Q96EG3 531 aaPredicted RBP6.94□□□□□ -1.3
ATG4A-201ENST00000343524 LIN37Q96GY3 246 aaPredicted RBP6.94□□□□□ -1.3
ATG4A-201ENST00000343524 FAM103A1Q9BTL3 118 aaKnown RBP6.94□□□□□ -1.3
ATG4A-201ENST00000343524 PSENENQ9NZ42 101 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 WNT16Q9UBV4 365 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 PPIAL4AQ9Y536 164 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 TMEM131Q92545 1883 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 MPDZO75970 2070 aa6.94□□□□□ -1.3
ATG4A-201ENST00000343524 A0A0J9YY10 115 aa6.93□□□□□ -1.3
ATG4A-201ENST00000343524 GAGE12BA1L429 117 aa6.93□□□□□ -1.3
ATG4A-201ENST00000343524 C17orf105B2RV13 164 aa6.93□□□□□ -1.3
ATG4A-201ENST00000343524 ALG1L2C9J202 215 aa6.93□□□□□ -1.3
ATG4A-201ENST00000343524 FAM90A26D6RGX4 464 aa6.93□□□□□ -1.3
ATG4A-201ENST00000343524 RBFOX2O43251 390 aaKnown RBP eCLIP6.93□□□□□ -1.3
ATG4A-201ENST00000343524 HCRTR1O43613 425 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms