RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 LIME1Q9H400 295 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 FBXL17Q9UF56 701 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 CFAP46Q8IYW2 2715 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 HIST1H2BKO60814 126 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 HIST1H2BJP06899 126 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 HIST1H2BOP23527 126 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 HIST1H2BBP33778 126 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 HIST1H2BDP58876 126 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 HIST1H2BCP62807 126 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 P2RY6Q15077 328 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 HIST2H2BEQ16778 126 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.07□□□□□ -0.64
COL18A1-201ENST00000342220 GGNBP1Q5YKI7 109 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 MEX3BQ6ZN04 569 aaKnown RBP11.07□□□□□ -0.64
COL18A1-201ENST00000342220 ZNF573Q86YE8 665 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 SGPP2Q8IWX5 399 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 NEUROG1Q92886 237 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 HIST1H2BHQ93079 126 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 NOL4LQ96MY1 436 aaPredicted RBP11.07□□□□□ -0.64
COL18A1-201ENST00000342220 HIST1H2BNQ99877 126 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 HIST1H2BMQ99879 126 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 EIF5A2Q9GZV4 153 aaKnown RBP11.07□□□□□ -0.64
COL18A1-201ENST00000342220 RYDENQ9NUL5 291 aaKnown RBP11.07□□□□□ -0.64
COL18A1-201ENST00000342220 TAAR3PQ9P1P4 343 aa11.07□□□□□ -0.64
COL18A1-201ENST00000342220 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.06□□□□□ -0.644e-8■■■□□ 16.3
COL18A1-201ENST00000342220 UMAD1C9J7I0 102 aa11.06□□□□□ -0.64
COL18A1-201ENST00000342220 M0R143 59 aa11.06□□□□□ -0.64
COL18A1-201ENST00000342220 ABCA11PQ4W5N1 156 aa11.06□□□□□ -0.64
COL18A1-201ENST00000342220 HEPN1Q6WQI6 88 aa11.06□□□□□ -0.64
COL18A1-201ENST00000342220 FAM58AQ8N1B3 248 aa11.06□□□□□ -0.64
COL18A1-201ENST00000342220 SCCPDHQ8NBX0 429 aa11.06□□□□□ -0.64
COL18A1-201ENST00000342220 TRAPPC2LQ9UL33 140 aa11.06□□□□□ -0.64
COL18A1-201ENST00000342220 USP9YO00507 2555 aaPredicted RBP11.06□□□□□ -0.64
COL18A1-201ENST00000342220 MBD3L4A6NDZ8 208 aaPredicted RBP11.06□□□□□ -0.64
COL18A1-201ENST00000342220 MBD3L3A6NE82 208 aaPredicted RBP11.06□□□□□ -0.64
COL18A1-201ENST00000342220 MBD3L5A6NJ08 208 aaPredicted RBP11.06□□□□□ -0.64
COL18A1-201ENST00000342220 CEACAM6P40199 344 aa11.06□□□□□ -0.64
COL18A1-201ENST00000342220 EDDM3BP56851 147 aa11.06□□□□□ -0.64
COL18A1-201ENST00000342220 RPUSD3Q6P087 351 aaKnown RBP11.06□□□□□ -0.64
COL18A1-201ENST00000342220 C1QL4Q86Z23 238 aa11.06□□□□□ -0.64
COL18A1-201ENST00000342220 MBD3L2Q8NHZ7 208 aaPredicted RBP11.06□□□□□ -0.64
COL18A1-201ENST00000342220 PUS1Q9Y606 427 aaKnown RBP eCLIP11.06□□□□□ -0.64
COL18A1-201ENST00000342220 A8MXE2 369 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 TAAR5O14804 337 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 TCF21O43680 179 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 OR5H8P0DN80 308 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 SULT1A2P50226 295 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 TMEM33P57088 247 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 EIF5AP63241 154 aaKnown RBP11.05□□□□□ -0.64
COL18A1-201ENST00000342220 MRPS11P82912 194 aaKnown RBP11.05□□□□□ -0.64
COL18A1-201ENST00000342220 TMEM268Q5VZI3 342 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 EIF5AL1Q6IS14 154 aaKnown RBP11.05□□□□□ -0.64
COL18A1-201ENST00000342220 Q6ZRG5 221 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 MOGAT3Q86VF5 341 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 FAM122AQ96E09 287 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 Q96M66 194 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 ANXA10Q9UJ72 324 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.05□□□□□ -0.64
COL18A1-201ENST00000342220 DEDDO75618 318 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 CST4P01036 141 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 FCGR3AP08637 254 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 FUT3P21217 361 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 HMGN3Q15651 99 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 BTNL8Q6UX41 500 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 PLSCR2Q9NRY7 297 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 RNF150Q9ULK6 438 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 KCNS2Q9ULS6 477 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 BSNQ9UPA5 3926 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 CRYM-AS1A6NIL9 109 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 ZNF727A8MUV8 499 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 DEFB108AA8MXU0 73 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 CTSDP07339 412 aaPredicted RBP11.05□□□□□ -0.64
COL18A1-201ENST00000342220 RBM11P57052 281 aaKnown RBP11.05□□□□□ -0.64
COL18A1-201ENST00000342220 CD81P60033 236 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 RPS23P62266 143 aaKnown RBP11.05□□□□□ -0.64
COL18A1-201ENST00000342220 ZNF343Q6P1L6 599 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 CSPG4Q6UVK1 2322 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 IGSF10Q6WRI0 2623 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 BEND2Q8NDZ0 799 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 ERGIC1Q969X5 290 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 ABCA12Q86UK0 2595 aa11.05□□□□□ -0.64
COL18A1-201ENST00000342220 IGHV3-43A0A0B4J1X8 118 aa11.04□□□□□ -0.64
COL18A1-201ENST00000342220 A0A1B0GV50 99 aa11.04□□□□□ -0.64
COL18A1-201ENST00000342220 OR13C7P0DN81 318 aa11.04□□□□□ -0.64
COL18A1-201ENST00000342220 IGHV3-43DP0DP04 118 aa11.04□□□□□ -0.64
COL18A1-201ENST00000342220 UCNP55089 124 aa11.04□□□□□ -0.64
COL18A1-201ENST00000342220 PIGPP57054 158 aa11.04□□□□□ -0.64
COL18A1-201ENST00000342220 HERV-K104P61576 105 aa11.04□□□□□ -0.64
COL18A1-201ENST00000342220 OR5P3Q8WZ94 311 aa11.04□□□□□ -0.64
COL18A1-201ENST00000342220 PDCD6O75340 191 aa11.04□□□□□ -0.64
COL18A1-201ENST00000342220 PTBP3O95758 552 aaKnown RBP11.04□□□□□ -0.64
COL18A1-201ENST00000342220 IFNA21P01568 189 aa11.04□□□□□ -0.64
COL18A1-201ENST00000342220 TRGC2P03986 189 aa11.04□□□□□ -0.64
COL18A1-201ENST00000342220 OMGP23515 440 aa11.04□□□□□ -0.64
COL18A1-201ENST00000342220 TDGF1P3P51864 188 aa11.04□□□□□ -0.64
COL18A1-201ENST00000342220 SPRNQ5BIV9 151 aa11.04□□□□□ -0.64
COL18A1-201ENST00000342220 ARSJQ5FYB0 599 aaPredicted RBP11.04□□□□□ -0.64
COL18A1-201ENST00000342220 LRRC29Q8WV35 223 aa11.04□□□□□ -0.64
COL18A1-201ENST00000342220 RBMXL1Q96E39 390 aaKnown RBP11.04□□□□□ -0.64
COL18A1-201ENST00000342220 GALNT14Q96FL9 552 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms