RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 K7N7A8 449 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 RELQ04864 619 aaPredicted RBP12.09□□□□□ -0.47
CSPG4-201ENST00000308508 PAPPA-AS1Q5QFB9 102 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 MOGAT3Q86VF5 341 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 OR4D5Q8NGN0 318 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 OR2Y1Q8NGV0 311 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 MARVELD3Q96A59 401 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 CDX4O14627 284 aaPredicted RBP12.09□□□□□ -0.47
CSPG4-201ENST00000308508 ARF6P62330 175 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 CBLN3Q6UW01 205 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 PRELID3AQ96N28 172 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 AQP10Q96PS8 301 aa12.09□□□□□ -0.47
CSPG4-201ENST00000308508 DPRXA6NFQ7 191 aa12.08□□□□□ -0.47
CSPG4-201ENST00000308508 CD1AP06126 327 aa12.08□□□□□ -0.47
CSPG4-201ENST00000308508 RBM11P57052 281 aaKnown RBP12.08□□□□□ -0.47
CSPG4-201ENST00000308508 GCSAMLQ5JQS6 135 aa12.08□□□□□ -0.47
CSPG4-201ENST00000308508 CRISPLD2Q9H0B8 497 aa12.08□□□□□ -0.47
CSPG4-201ENST00000308508 GPR35Q9HC97 309 aa12.08□□□□□ -0.47
CSPG4-201ENST00000308508 C19orf67A6NJJ6 358 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 IGHV4-34P06331 123 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 VSIG10L2P0DP72 767 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 NUDT10Q8NFP7 164 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 NUDT11Q96G61 164 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 SMOC1Q9H4F8 434 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 GEMIN7Q9H840 131 aaKnown RBP12.08□□□□□ -0.48
CSPG4-201ENST00000308508 TNFSF10P50591 281 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 SMAD4Q13485 552 aaKnown RBP12.08□□□□□ -0.48
CSPG4-201ENST00000308508 MEIG1Q5JSS6 88 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 AMER3Q8N944 861 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 TMEM222Q9H0R3 208 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 BEX4Q9NWD9 120 aaPredicted RBP12.08□□□□□ -0.48
CSPG4-201ENST00000308508 OR2A4O95047 310 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 PSG9Q00887 426 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 ECSCRQ19T08 205 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 DCAF12L2Q5VW00 463 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 ZNF645Q8N7E2 425 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 OR2A7Q96R45 310 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 NPIPB8E9PQR5 432 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 NPIPB9F8W1W9 429 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 NPIPB7O75200 414 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 UBALD2Q8IYN6 164 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 A0A1W2PS18 150 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 FCGR3AP08637 254 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 TMEM91Q6ZNR0 172 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 NEU1Q99519 415 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 TRBV23-1A0A0A0MS06 115 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 LINC00869P0C866 280 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 HIST1H1AQ02539 215 aaPredicted RBP12.08□□□□□ -0.48
CSPG4-201ENST00000308508 DIRC2Q96SL1 478 aa12.08□□□□□ -0.48
CSPG4-201ENST00000308508 IGHV5-51A0A0C4DH38 117 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 GGTLC2Q14390 218 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 LINC01555Q8NAE3 123 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 ZNF714Q96N38 554 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 S1PR2O95136 353 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 HOXC4P09017 264 aaPredicted RBP12.07□□□□□ -0.48
CSPG4-201ENST00000308508 PRDX2P32119 198 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 MMDQ15546 238 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 TLNRD1Q9H1K6 362 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 ARL14EPLP0DKL9 152 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 KRTCAP3Q53RY4 240 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 SAMD13Q5VXD3 122 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 PRSS41Q7RTY9 318 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 SPEM1Q8N4L4 309 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 OR8G5Q8NG78 346 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 TAF15Q92804 592 aaKnown RBP eCLIP12.07□□□□□ -0.48
CSPG4-201ENST00000308508 KIR2DL4Q99706 377 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 WNT9BO14905 357 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 TRGC1P0CF51 173 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 NUBP1P53384 320 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 WFDC3Q8IUB2 231 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 MRPS18AQ9NVS2 196 aaKnown RBP12.07□□□□□ -0.48
CSPG4-201ENST00000308508 ST6GALNAC2Q9UJ37 374 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 TMEM56-RWDD3S4R434 201 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 MYOGP15173 224 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 C1orf174Q8IYL3 243 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 SPSB4Q96A44 273 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 EFNB2P52799 333 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 ATOH7Q8N100 152 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 TMEM30AQ9NV96 361 aa12.07□□□□□ -0.48
CSPG4-201ENST00000308508 HOXD4P09016 255 aaPredicted RBP12.06□□□□□ -0.48
CSPG4-201ENST00000308508 HKR1P10072 659 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 ANOS1P23352 680 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 C10orf128Q5T292 105 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 ZNF414Q96IQ9 312 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 PRSS27Q9BQR3 290 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 FAM90A27PA6NNH2 459 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 SIGLEC5O15389 551 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 TEX30Q5JUR7 227 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 TMEM252Q8N6L7 170 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 PPP1R3EQ9H7J1 279 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 H0YL77 283 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 MGAT2Q10469 447 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 TMEM196Q5HYL7 178 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 CT62P0C5K7 136 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 KIF26BQ2KJY2 2108 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 CADM4Q8NFZ8 388 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 C19orf24Q9BVV8 132 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 RALGAPA1Q6GYQ0 2036 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 A0A1B0GWB2 263 aa12.06□□□□□ -0.48
CSPG4-201ENST00000308508 TCF23Q7RTU1 214 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms