RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 ZNRF1Q8ND25 227 aa11.9□□□□□ -0.5
C9orf3-202ENST00000297979 RNASE11Q8TAA1 199 aaKnown RBP11.9□□□□□ -0.5
C9orf3-202ENST00000297979 RNF115Q9Y4L5 304 aa11.9□□□□□ -0.5
C9orf3-202ENST00000297979 RBM7Q9Y580 266 aaKnown RBP11.9□□□□□ -0.5
C9orf3-202ENST00000297979 ICE1Q9Y2F5 2266 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 TUBAL3A6NHL2 446 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 OR2F2O95006 317 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 SMIM6P0DI80 62 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 PET100P0DJ07 73 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 APOBEC3AP31941 199 aaPredicted RBP11.89□□□□□ -0.51
C9orf3-202ENST00000297979 CACNA1DQ01668 2161 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 OR2F1Q13607 317 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 TM4SF20Q53R12 229 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 ZNF561Q8N587 486 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 GPHA2Q96T91 129 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 SAP30LQ9HAJ7 183 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 DYNLRB1Q9NP97 96 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 SLC35D1Q9NTN3 355 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 MAB21L2Q9Y586 359 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 DYSFO75923 2080 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 ODAMA1E959 279 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 RNF222A6NCQ9 220 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 PGPEP1LA6NFU8 196 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 LRRC30A6NM36 301 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 H0Y980 276 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 TNFSF12O43508 249 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 IFNA7P01567 189 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 SSTR5P35346 364 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 CAMLGP49069 296 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 RAB32Q13637 225 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 EFNB3Q15768 340 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 TMEM268Q5VZI3 342 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 ACOT7LQ6ZUV0 252 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 DCUN1D4Q92564 292 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 SDSLQ96GA7 329 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 RNF126Q9BV68 326 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 PARP12Q9H0J9 701 aaKnown RBP11.89□□□□□ -0.51
C9orf3-202ENST00000297979 KIAA2026Q5HYC2 2103 aa11.89□□□□□ -0.51
C9orf3-202ENST00000297979 MUC1P15941 1255 aaPredicted RBP11.88□□□□□ -0.51
C9orf3-202ENST00000297979 TEX36Q5VZQ5 186 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 PRSS54Q6PEW0 395 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 TGIF2LYQ8IUE0 185 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 KCNRGQ8N5I3 272 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 SLC35G3Q8N808 338 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 INO80EQ8NBZ0 244 aaPredicted RBP11.88□□□□□ -0.51
C9orf3-202ENST00000297979 NINJ1Q92982 152 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 ARL11Q969Q4 196 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 BSCL2Q96G97 398 aaPredicted RBP11.88□□□□□ -0.51
C9orf3-202ENST00000297979 AKR1E2Q96JD6 320 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 TMEM56Q96MV1 263 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 TOLLIPQ9H0E2 274 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 KCNS2Q9ULS6 477 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 TMED3Q9Y3Q3 217 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 TMEM56-RWDD3S4R434 201 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 A0A0U1RQK1 487 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 ZNF320A2RRD8 509 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 H0YIZ8 118 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 SPINT2O43291 252 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 OR8U9P0C7N5 309 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 LYL1P12980 280 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 F2RP25116 425 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 UCP1P25874 307 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 S100A10P60903 97 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 EXOSC2Q13868 293 aaKnown RBP11.88□□□□□ -0.51
C9orf3-202ENST00000297979 OR52L2PQ8NGH6 319 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 OR5D13Q8NGL4 314 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 OR8U1Q8NH10 309 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 DCTN5Q9BTE1 182 aa11.88□□□□□ -0.51
C9orf3-202ENST00000297979 SIAH2O43255 324 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 PLAUP00749 431 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 IGLV2-14P01704 120 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 ZNF695Q8IW36 515 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 DEFB108BQ8NET1 73 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 MS4A5Q9H3V2 200 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 RAI1Q7Z5J4 1906 aaPredicted RBP11.87□□□□□ -0.51
C9orf3-202ENST00000297979 C15orf65H3BRN8 121 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 CFDP00746 253 aaPredicted RBP11.87□□□□□ -0.51
C9orf3-202ENST00000297979 GZMHP20718 246 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 EDDM3BP56851 147 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 TFF3Q07654 80 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 GNMTQ14749 295 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 GAFA1Q96PS6 74 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 ZNF665Q9H7R5 613 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 SEPSECSQ9HD40 501 aaKnown RBP11.87□□□□□ -0.51
C9orf3-202ENST00000297979 CISD1Q9NZ45 108 aaKnown RBP11.87□□□□□ -0.51
C9orf3-202ENST00000297979 OR5AC2Q9NZP5 309 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 CDS2O95674 445 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 GYPAP02724 150 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 WNT2P09544 360 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 CR1LQ2VPA4 569 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 FAM219AQ8IW50 185 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 C1orf87Q8N0U7 546 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 OR51H1Q8NH63 302 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 OR2S2Q9NQN1 319 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 UBQLN2Q9UHD9 624 aa11.87□□□□□ -0.51
C9orf3-202ENST00000297979 DSCAMO60469 2012 aa11.86□□□□□ -0.51
C9orf3-202ENST00000297979 DUXBA0A1W2PPF3 345 aa11.86□□□□□ -0.51
C9orf3-202ENST00000297979 KANTRA0A1W2PQU2 76 aa11.86□□□□□ -0.51
C9orf3-202ENST00000297979 MST1LQ2TV78 715 aa11.86□□□□□ -0.51
C9orf3-202ENST00000297979 AKIRIN2Q53H80 203 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms