RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 RUNX1Q01196 453 aa9.91□□□□□ -0.82
CD44-203ENST00000278386 ACSM3Q53FZ2 586 aa9.91□□□□□ -0.82
CD44-203ENST00000278386 RPL39P5Q59GN2 51 aa9.91□□□□□ -0.82
CD44-203ENST00000278386 GLDNQ6ZMI3 551 aaPredicted RBP9.91□□□□□ -0.82
CD44-203ENST00000278386 NANOGP1Q8N7R0 232 aa9.91□□□□□ -0.82
CD44-203ENST00000278386 CASTOR1Q8WTX7 329 aa9.91□□□□□ -0.82
CD44-203ENST00000278386 DCUN1D4Q92564 292 aa9.91□□□□□ -0.82
CD44-203ENST00000278386 MND1Q9BWT6 205 aa9.91□□□□□ -0.82
CD44-203ENST00000278386 FBXL15Q9H469 300 aa9.91□□□□□ -0.82
CD44-203ENST00000278386 LRRC42Q9Y546 428 aa9.91□□□□□ -0.82
CD44-203ENST00000278386 SMAD5-AS1Q9Y6J3 95 aa9.91□□□□□ -0.82
CD44-203ENST00000278386 TENM3Q9P273 2699 aa9.91□□□□□ -0.82
CD44-203ENST00000278386 HUWE1Q7Z6Z7 4374 aaKnown RBP9.91□□□□□ -0.82
CD44-203ENST00000278386 OR5H14A6NHG9 310 aa9.9□□□□□ -0.82
CD44-203ENST00000278386 LINC01619G3V211 115 aa9.9□□□□□ -0.82
CD44-203ENST00000278386 RRHO14718 337 aa9.9□□□□□ -0.82
CD44-203ENST00000278386 RAB29O14966 203 aa9.9□□□□□ -0.82
CD44-203ENST00000278386 GSTP1P09211 210 aaKnown RBP9.9□□□□□ -0.82
CD44-203ENST00000278386 HTR2CP28335 458 aa9.9□□□□□ -0.82
CD44-203ENST00000278386 HSD17B12Q53GQ0 312 aa9.9□□□□□ -0.82
CD44-203ENST00000278386 LY6G6FQ5SQ64 297 aa9.9□□□□□ -0.82
CD44-203ENST00000278386 LAIR2Q6ISS4 152 aa9.9□□□□□ -0.82
CD44-203ENST00000278386 ZNF429Q86V71 674 aa9.9□□□□□ -0.82
CD44-203ENST00000278386 NPBQ8NG41 125 aa9.9□□□□□ -0.82
CD44-203ENST00000278386 KCNG3Q8TAE7 436 aa9.9□□□□□ -0.82
CD44-203ENST00000278386 SLC23A1Q9UHI7 598 aa9.9□□□□□ -0.82
CD44-203ENST00000278386 FOXA2Q9Y261 457 aaPredicted RBP9.9□□□□□ -0.82
CD44-203ENST00000278386 FBXO7Q9Y3I1 522 aa9.9□□□□□ -0.82
CD44-203ENST00000278386 H0YJW9 148 aa9.89□□□□□ -0.83
CD44-203ENST00000278386 HSPA12AO43301 675 aa9.89□□□□□ -0.83
CD44-203ENST00000278386 LGALS1P09382 135 aaKnown RBP9.89□□□□□ -0.83
CD44-203ENST00000278386 HLA-DRB3P79483 266 aa9.89□□□□□ -0.83
CD44-203ENST00000278386 UNC119Q13432 240 aa9.89□□□□□ -0.83
CD44-203ENST00000278386 KIAA0141Q14154 515 aaPredicted RBP9.89□□□□□ -0.83
CD44-203ENST00000278386 LRRTM1Q86UE6 522 aa9.89□□□□□ -0.83
CD44-203ENST00000278386 MS4A15Q8N5U1 240 aa9.89□□□□□ -0.83
CD44-203ENST00000278386 TCTEX1D1Q8N7M0 179 aa9.89□□□□□ -0.83
CD44-203ENST00000278386 MINDY2Q8NBR6 621 aa9.89□□□□□ -0.83
CD44-203ENST00000278386 PHYHIPQ92561 330 aa9.89□□□□□ -0.83
CD44-203ENST00000278386 ABHD14BQ96IU4 210 aa9.89□□□□□ -0.83
CD44-203ENST00000278386 CLCC1Q96S66 551 aa9.89□□□□□ -0.83
CD44-203ENST00000278386 TM2D1Q9BX74 207 aa9.89□□□□□ -0.83
CD44-203ENST00000278386 PARP12Q9H0J9 701 aaKnown RBP9.89□□□□□ -0.83
CD44-203ENST00000278386 VCXQ9H320 206 aa9.89□□□□□ -0.83
CD44-203ENST00000278386 PLCXD1Q9NUJ7 323 aa9.89□□□□□ -0.83
CD44-203ENST00000278386 PLEKHJ1Q9NW61 149 aa9.89□□□□□ -0.83
CD44-203ENST00000278386 WASHC3Q9Y3C0 194 aa9.89□□□□□ -0.83
CD44-203ENST00000278386 IGHV4OR15-8A0A075B7B6 117 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 A0A087WW49 117 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 SOX15O60248 233 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 BPNT1O95861 308 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 NAPSAO96009 420 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 IGHV3-11P01762 117 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 CT45A6P0DMU7 189 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 CT45A5P0DMU8 189 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 CT45A7P0DMV0 189 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 TPPP2P59282 170 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 CX3CL1P78423 397 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 PITPNAQ00169 270 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 TMEM267Q0VDI3 215 aaPredicted RBP9.88□□□□□ -0.83
CD44-203ENST00000278386 MED22Q15528 200 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 ACTBL2Q562R1 376 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 C1orf100Q5SVJ3 147 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 ZNF660Q6AZW8 331 aaPredicted RBP9.88□□□□□ -0.83
CD44-203ENST00000278386 PYHIN1Q6K0P9 492 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 ZNF880Q6PDB4 577 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 UNQ5815/PRO19632Q6UWF5 114 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 CEACAM19Q7Z692 300 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 OR6M1Q8NGM8 313 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 OR6Q1Q8NGQ2 317 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 FBLIM1Q8WUP2 373 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 EDARADDQ8WWZ3 215 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 ARPC1AQ92747 370 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 DLX4Q92988 240 aaPredicted RBP9.88□□□□□ -0.83
CD44-203ENST00000278386 HDHD3Q9BSH5 251 aaPredicted RBP9.88□□□□□ -0.83
CD44-203ENST00000278386 FAM103A1Q9BTL3 118 aaKnown RBP9.88□□□□□ -0.83
CD44-203ENST00000278386 TOLLIPQ9H0E2 274 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 GHITMQ9H3K2 345 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 PLGRKTQ9HBL7 147 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 FKBP14Q9NWM8 211 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 OR1A1Q9P1Q5 309 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 METTL1Q9UBP6 276 aaKnown RBP9.88□□□□□ -0.83
CD44-203ENST00000278386 RNF150Q9ULK6 438 aa9.88□□□□□ -0.83
CD44-203ENST00000278386 A0A0A6YYD4 124 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 TMEM14DPA8MWL7 114 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 C3orf84H3BNL1 204 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 RBBP9O75884 186 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 CA2P00918 260 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 CDK1P06493 297 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 OR8U9P0C7N5 309 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 SPNP16150 400 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 CPEP16870 476 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 SRMP19623 302 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 MC5RP33032 325 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 CRIP2P52943 208 aaPredicted RBP9.87□□□□□ -0.83
CD44-203ENST00000278386 P2RY14Q15391 338 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 C19orf54Q5BKX5 351 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 OGFRL1Q5TC84 451 aaPredicted RBP9.87□□□□□ -0.83
CD44-203ENST00000278386 OVCH2Q7RTZ1 564 aa9.87□□□□□ -0.83
CD44-203ENST00000278386 PPP1R27Q86WC6 154 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms