RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SCGB1D4Q6XE38 83 aa16.58■□□□□ 0.24
UPF1-201ENST00000262803 FAM222BQ8WU58 562 aa16.58■□□□□ 0.24
UPF1-201ENST00000262803 G6PCP35575 357 aa16.58■□□□□ 0.24
UPF1-201ENST00000262803 OR1K1Q8NGR3 316 aa16.58■□□□□ 0.24
UPF1-201ENST00000262803 TRAV39A0A0B4J263 110 aa16.58■□□□□ 0.24
UPF1-201ENST00000262803 S1PR2O95136 353 aa16.58■□□□□ 0.24
UPF1-201ENST00000262803 ROM1Q03395 351 aa16.58■□□□□ 0.24
UPF1-201ENST00000262803 AESQ08117 197 aa16.58■□□□□ 0.24
UPF1-201ENST00000262803 FAM106AQ4KMX7 169 aa16.58■□□□□ 0.24
UPF1-201ENST00000262803 ZNF645Q8N7E2 425 aa16.58■□□□□ 0.24
UPF1-201ENST00000262803 FADS6Q8N9I5 356 aa16.58■□□□□ 0.24
UPF1-201ENST00000262803 LPAR5Q9H1C0 372 aa16.58■□□□□ 0.24
UPF1-201ENST00000262803 ZNF253O75346 499 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 MGPP08493 103 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 HOXA6P31267 233 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 PSMB2P49721 201 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 PPOXP50336 477 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 PSG4Q00888 419 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 HIST3H3Q16695 136 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 DCAF12L2Q5VW00 463 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 SLC16A13Q7RTY0 426 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 OR8G5Q8NG78 346 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 KCNK7Q9Y2U2 307 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 AHCTF1Q8WYP5 2266 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 MPV17P39210 176 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 TMEM255AQ5JRV8 349 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 SLC22A18ASQ8N1D0 253 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 MSL2Q9HCI7 577 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 CISD1Q9NZ45 108 aaKnown RBP16.57■□□□□ 0.24
UPF1-201ENST00000262803 TRBV5-5A0A0J9YX44 114 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 IL11P20809 199 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 SPANXN1Q5VSR9 72 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 SLC25A47Q6Q0C1 308 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 H1FOOQ8IZA3 346 aaPredicted RBP16.57■□□□□ 0.24
UPF1-201ENST00000262803 AMELYQ99218 206 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 IDI2-AS1Q9NZ38 188 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 FCGR3AP08637 254 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 NUBP1P53384 320 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 PSG9Q00887 426 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 RRN3P1Q2M238 152 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 ATG101Q9BSB4 218 aa16.57■□□□□ 0.24
UPF1-201ENST00000262803 CXCL2P19875 107 aa16.56■□□□□ 0.24
UPF1-201ENST00000262803 NAAAQ02083 359 aa16.56■□□□□ 0.24
UPF1-201ENST00000262803 ZXDCQ2QGD7 858 aaPredicted RBP16.56■□□□□ 0.24
UPF1-201ENST00000262803 RAX2Q96IS3 184 aa16.56■□□□□ 0.24
UPF1-201ENST00000262803 PRO1933Q9H354 126 aa16.56■□□□□ 0.24
UPF1-201ENST00000262803 QSER1Q2KHR3 1735 aa16.56■□□□□ 0.24
UPF1-201ENST00000262803 FOXH1O75593 365 aa16.56■□□□□ 0.24
UPF1-201ENST00000262803 UPK3AO75631 287 aa16.56■□□□□ 0.24
UPF1-201ENST00000262803 TSPOP30536 169 aa16.56■□□□□ 0.24
UPF1-201ENST00000262803 NCMAPQ5T1S8 102 aa16.56■□□□□ 0.24
UPF1-201ENST00000262803 LAIR2Q6ISS4 152 aa16.56■□□□□ 0.24
UPF1-201ENST00000262803 IGHV3OR15-7A0A075B7D8 119 aa16.56■□□□□ 0.24
UPF1-201ENST00000262803 ISG15P05161 165 aa16.56■□□□□ 0.24
UPF1-201ENST00000262803 PSG2P11465 335 aa16.56■□□□□ 0.24
UPF1-201ENST00000262803 SSMEM1Q8WWF3 244 aa16.56■□□□□ 0.24
UPF1-201ENST00000262803 A6NDN8 102 aa16.55■□□□□ 0.24
UPF1-201ENST00000262803 CD1BP29016 333 aa16.55■□□□□ 0.24
UPF1-201ENST00000262803 OPN3Q9H1Y3 402 aaPredicted RBP16.55■□□□□ 0.24
UPF1-201ENST00000262803 CCDC88CQ9P219 2028 aa16.55■□□□□ 0.24
UPF1-201ENST00000262803 GFRA1P56159 465 aa16.55■□□□□ 0.24
UPF1-201ENST00000262803 ADAMTS17Q8TE56 1095 aa16.55■□□□□ 0.24
UPF1-201ENST00000262803 ELOVL1Q9BW60 279 aa16.55■□□□□ 0.24
UPF1-201ENST00000262803 COL11A2P13942 1736 aaPredicted RBP16.55■□□□□ 0.24
UPF1-201ENST00000262803 C4orf51C9J302 202 aa16.55■□□□□ 0.24
UPF1-201ENST00000262803 GFRA3O60609 400 aa16.55■□□□□ 0.24
UPF1-201ENST00000262803 DLK1P80370 383 aa16.55■□□□□ 0.24
UPF1-201ENST00000262803 CACNA1IQ9P0X4 2223 aa16.55■□□□□ 0.24
UPF1-201ENST00000262803 MT-ND6P03923 174 aa16.55■□□□□ 0.24
UPF1-201ENST00000262803 PRDM14Q9GZV8 571 aa16.55■□□□□ 0.24
UPF1-201ENST00000262803 RCC2Q9P258 522 aaKnown RBP16.55■□□□□ 0.24
UPF1-201ENST00000262803 JPT1Q9UK76 154 aa16.55■□□□□ 0.24
UPF1-201ENST00000262803 B9A039 149 aa16.54■□□□□ 0.24
UPF1-201ENST00000262803 ZNF207O43670 478 aaKnown RBP16.54■□□□□ 0.24
UPF1-201ENST00000262803 C19orf54Q5BKX5 351 aa16.54■□□□□ 0.24
UPF1-201ENST00000262803 KCNE5Q9UJ90 142 aa16.54■□□□□ 0.24
UPF1-201ENST00000262803 NPIPB13A6NJU9 1138 aa16.54■□□□□ 0.24
UPF1-201ENST00000262803 NPIPB4C9JG80 1138 aa16.54■□□□□ 0.24
UPF1-201ENST00000262803 C19orf24Q9BVV8 132 aa16.54■□□□□ 0.24
UPF1-201ENST00000262803 PLXNB2O15031 1838 aa16.54■□□□□ 0.24
UPF1-201ENST00000262803 C5orf52A6NGY3 159 aa16.54■□□□□ 0.24
UPF1-201ENST00000262803 A8MWL6 223 aa16.54■□□□□ 0.24
UPF1-201ENST00000262803 APCSP02743 223 aa16.54■□□□□ 0.24
UPF1-201ENST00000262803 MFAP4P55083 255 aa16.54■□□□□ 0.24
UPF1-201ENST00000262803 SRD5A3Q9H8P0 318 aa16.54■□□□□ 0.24
UPF1-201ENST00000262803 ZNF729A6NN14 1252 aaPredicted RBP16.54■□□□□ 0.24
UPF1-201ENST00000262803 CEACAM18A8MTB9 384 aa16.54■□□□□ 0.24
UPF1-201ENST00000262803 RPL8P62917 257 aaKnown RBP16.54■□□□□ 0.24
UPF1-201ENST00000262803 TMEM186Q96B77 213 aa16.54■□□□□ 0.24
UPF1-201ENST00000262803 SLC25A38Q96DW6 304 aa16.54■□□□□ 0.24
UPF1-201ENST00000262803 A0A1W2PP11 408 aa16.53■□□□□ 0.24
UPF1-201ENST00000262803 CD40P25942 277 aa16.53■□□□□ 0.24
UPF1-201ENST00000262803 ATP6V0CP27449 155 aa16.53■□□□□ 0.24
UPF1-201ENST00000262803 DNM1P46Q6ZS02 220 aa16.53■□□□□ 0.24
UPF1-201ENST00000262803 IL22RA2Q969J5 263 aa16.53■□□□□ 0.24
UPF1-201ENST00000262803 CCL13Q99616 98 aa16.53■□□□□ 0.24
UPF1-201ENST00000262803 METTL1Q9UBP6 276 aaKnown RBP16.53■□□□□ 0.24
UPF1-201ENST00000262803 SPTBP11277 2137 aa16.53■□□□□ 0.24
UPF1-201ENST00000262803 M0QZK8 103 aa16.53■□□□□ 0.24
UPF1-201ENST00000262803 GGCTO75223 188 aaKnown RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms