RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 CALYQ9NYX4 217 aa16.33■□□□□ 0.21
PTPRE-201ENST00000254667 COMPP49747 757 aaPredicted RBP16.33■□□□□ 0.2
PTPRE-201ENST00000254667 SLC25A38Q96DW6 304 aa16.33■□□□□ 0.2
PTPRE-201ENST00000254667 UFC1Q9Y3C8 167 aa16.33■□□□□ 0.2
PTPRE-201ENST00000254667 CHCHD2Q9Y6H1 151 aaPredicted RBP16.33■□□□□ 0.2
PTPRE-201ENST00000254667 FAM90A26D6RGX4 464 aa16.33■□□□□ 0.2
PTPRE-201ENST00000254667 FAM87AP0C7U9 286 aa16.33■□□□□ 0.2
PTPRE-201ENST00000254667 C16orf82Q7Z2V1 217 aa16.33■□□□□ 0.2
PTPRE-201ENST00000254667 JPT1Q9UK76 154 aa16.33■□□□□ 0.2
PTPRE-201ENST00000254667 ELOA3CA0A087WX78 387 aaPredicted RBP16.32■□□□□ 0.2
PTPRE-201ENST00000254667 DEDDO75618 318 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 ERVS71-1P61550 626 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 MRPL30Q8TCC3 161 aaKnown RBP16.32■□□□□ 0.2
PTPRE-201ENST00000254667 LINC00862A6NCI5 91 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 SYNGR3O43761 229 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 CD300CQ08708 224 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 Q1RN00 199 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 ATP1A1-AS1Q5TC04 95 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 Q96M66 194 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 ZNF703Q9H7S9 590 aaPredicted RBP16.32■□□□□ 0.2
PTPRE-201ENST00000254667 CRISP2P16562 243 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 ZFC3H1O60293 1989 aaKnown RBP16.32■□□□□ 0.2
PTPRE-201ENST00000254667 LEUTXA8MZ59 168 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 RPL8P62917 257 aaKnown RBP16.32■□□□□ 0.2
PTPRE-201ENST00000254667 DLK1P80370 383 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 TMEM183BQ1AE95 376 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 TMEM97Q5BJF2 176 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 OR10C1Q96KK4 312 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 DGAT2L7PQ6IED9 249 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 SNRNP40Q96DI7 357 aaKnown RBP16.32■□□□□ 0.2
PTPRE-201ENST00000254667 P2RX4Q99571 388 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 TXNDC17Q9BRA2 123 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 PAXXQ9BUH6 204 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 SLC2A8Q9NY64 477 aa16.32■□□□□ 0.2
PTPRE-201ENST00000254667 DOCK3Q8IZD9 2030 aa16.31■□□□□ 0.2
PTPRE-201ENST00000254667 PIN1P1O15428 100 aa16.31■□□□□ 0.2
PTPRE-201ENST00000254667 RHOVQ96L33 236 aa16.31■□□□□ 0.2
PTPRE-201ENST00000254667 CEACAM1P13688 526 aa16.31■□□□□ 0.2
PTPRE-201ENST00000254667 RPL13AP40429 203 aaKnown RBP16.31■□□□□ 0.2
PTPRE-201ENST00000254667 NSUN5P2Q63ZY6 315 aa16.31■□□□□ 0.2
PTPRE-201ENST00000254667 TMEM252Q8N6L7 170 aa16.31■□□□□ 0.2
PTPRE-201ENST00000254667 ZNF552Q9H707 407 aaPredicted RBP16.31■□□□□ 0.2
PTPRE-201ENST00000254667 LOC285556D6RIA3 1793 aa16.31■□□□□ 0.2
PTPRE-201ENST00000254667 SLC35B1P78383 322 aa16.31■□□□□ 0.2
PTPRE-201ENST00000254667 VAMP3Q15836 100 aa16.31■□□□□ 0.2
PTPRE-201ENST00000254667 PIMREGQ9BSJ6 248 aa16.31■□□□□ 0.2
PTPRE-201ENST00000254667 CEACAM18A8MTB9 384 aa16.31■□□□□ 0.2
PTPRE-201ENST00000254667 LMX1BO60663 402 aa16.31■□□□□ 0.2
PTPRE-201ENST00000254667 PGLYRP1O75594 196 aaPredicted RBP16.31■□□□□ 0.2
PTPRE-201ENST00000254667 SNRPEP62304 92 aaKnown RBP16.31■□□□□ 0.2
PTPRE-201ENST00000254667 C19orf57Q0VDD7 668 aa16.31■□□□□ 0.2
PTPRE-201ENST00000254667 EIF4E3Q8N5X7 224 aaKnown RBP16.31■□□□□ 0.2
PTPRE-201ENST00000254667 IL22RA2Q969J5 263 aa16.31■□□□□ 0.2
PTPRE-201ENST00000254667 LINC00052Q96N35 136 aa16.31■□□□□ 0.2
PTPRE-201ENST00000254667 SCNM1Q9BWG6 230 aa16.31■□□□□ 0.2
PTPRE-201ENST00000254667 ARID2Q68CP9 1835 aa16.3■□□□□ 0.2
PTPRE-201ENST00000254667 SMPD2O60906 423 aa16.3■□□□□ 0.2
PTPRE-201ENST00000254667 NRN1LQ496H8 165 aa16.3■□□□□ 0.2
PTPRE-201ENST00000254667 FDCSPQ8NFU4 85 aa16.3■□□□□ 0.2
PTPRE-201ENST00000254667 BRCA1P38398 1863 aaKnown RBP16.3■□□□□ 0.2
PTPRE-201ENST00000254667 HOXA6P31267 233 aa16.3■□□□□ 0.2
PTPRE-201ENST00000254667 PMS2P11Q13670 270 aa16.3■□□□□ 0.2
PTPRE-201ENST00000254667 SIGIRRQ6IA17 410 aa16.3■□□□□ 0.2
PTPRE-201ENST00000254667 METTL1Q9UBP6 276 aaKnown RBP16.3■□□□□ 0.2
PTPRE-201ENST00000254667 RABAC1Q9UI14 185 aa16.3■□□□□ 0.2
PTPRE-201ENST00000254667 ZNF729A6NN14 1252 aaPredicted RBP16.3■□□□□ 0.2
PTPRE-201ENST00000254667 NPIPB9F8W1W9 429 aa16.3■□□□□ 0.2
PTPRE-201ENST00000254667 DLL1O00548 723 aa16.3■□□□□ 0.2
PTPRE-201ENST00000254667 KLF4O43474 513 aa16.3■□□□□ 0.2
PTPRE-201ENST00000254667 RECKO95980 971 aa16.3■□□□□ 0.2
PTPRE-201ENST00000254667 C7orf77A4D0Y5 90 aa16.3■□□□□ 0.2
PTPRE-201ENST00000254667 MFSD2BA6NFX1 497 aa16.3■□□□□ 0.2
PTPRE-201ENST00000254667 TRBV23-1A0A0A0MS06 115 aa16.29■□□□□ 0.2
PTPRE-201ENST00000254667 B9A039 149 aa16.29■□□□□ 0.2
PTPRE-201ENST00000254667 HILPDAQ9Y5L2 63 aa16.29■□□□□ 0.2
PTPRE-201ENST00000254667 ZNF253O75346 499 aa16.29■□□□□ 0.2
PTPRE-201ENST00000254667 TIMM23BQ5SRD1 257 aa16.29■□□□□ 0.2
PTPRE-201ENST00000254667 SRD5A3Q9H8P0 318 aa16.29■□□□□ 0.2
PTPRE-201ENST00000254667 SIPA1L1O43166 1804 aa16.29■□□□□ 0.2
PTPRE-201ENST00000254667 H3BQ15 152 aa16.29■□□□□ 0.2
PTPRE-201ENST00000254667 ZNF273Q14593 569 aa16.29■□□□□ 0.2
PTPRE-201ENST00000254667 PXMP4Q9Y6I8 212 aa16.29■□□□□ 0.2
PTPRE-201ENST00000254667 ISLRO14498 428 aa16.29■□□□□ 0.2
PTPRE-201ENST00000254667 LOXL3P58215 753 aa16.29■□□□□ 0.2
PTPRE-201ENST00000254667 IFITM3Q01628 133 aa16.29■□□□□ 0.2
PTPRE-201ENST00000254667 HLA-DRB5Q30154 266 aa16.29■□□□□ 0.2
PTPRE-201ENST00000254667 OR4A5Q8NH83 315 aa16.29■□□□□ 0.2
PTPRE-201ENST00000254667 NPDC1Q9NQX5 325 aaPredicted RBP16.29■□□□□ 0.2
PTPRE-201ENST00000254667 AP4M1O00189 453 aa16.28■□□□□ 0.2
PTPRE-201ENST00000254667 APELAP0DMC3 54 aa16.28■□□□□ 0.2
PTPRE-201ENST00000254667 TCL1AP56279 114 aa16.28■□□□□ 0.2
PTPRE-201ENST00000254667 CHAC2Q8WUX2 184 aa16.28■□□□□ 0.2
PTPRE-201ENST00000254667 TRAF4Q9BUZ4 470 aaPredicted RBP16.28■□□□□ 0.2
PTPRE-201ENST00000254667 TUBD1Q9UJT1 453 aa16.28■□□□□ 0.2
PTPRE-201ENST00000254667 TMEM14DPA8MWL7 114 aa16.28■□□□□ 0.2
PTPRE-201ENST00000254667 UBE2V2Q15819 145 aa16.28■□□□□ 0.2
PTPRE-201ENST00000254667 LRRC75BQ2VPJ9 315 aa16.28■□□□□ 0.2
PTPRE-201ENST00000254667 TMEM116Q8NCL8 245 aa16.28■□□□□ 0.2
PTPRE-201ENST00000254667 OR9G1Q8NH87 305 aa16.28■□□□□ 0.2
PTPRE-201ENST00000254667 PITPNC1Q9UKF7 332 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms