RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ZCCHC14Q8WYQ9 949 aaKnown RBP12.22□□□□□ -0.45
SDC1-201ENST00000254351 BTF3L4Q96K17 158 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 RYDENQ9NUL5 291 aaKnown RBP12.22□□□□□ -0.45
SDC1-201ENST00000254351 TRAV1-1A0A0B4J248 108 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 SLC17A3O00476 420 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 SYNGR1O43759 233 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 BAGE3Q86Y29 109 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 BAGE2Q86Y30 109 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 DEFB123Q8N688 67 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 OR56B2PQ8NGI1 322 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 R3HDM4Q96D70 268 aa12.22□□□□□ -0.45
SDC1-201ENST00000254351 LINC00205P59089 165 aa12.21□□□□□ -0.45
SDC1-201ENST00000254351 ZNF816Q0VGE8 651 aaPredicted RBP12.21□□□□□ -0.45
SDC1-201ENST00000254351 LRRC75BQ2VPJ9 315 aa12.21□□□□□ -0.45
SDC1-201ENST00000254351 KIAA1644Q3SXP7 199 aa12.21□□□□□ -0.45
SDC1-201ENST00000254351 YRDCQ86U90 279 aaKnown RBP12.21□□□□□ -0.45
SDC1-201ENST00000254351 ZNF808Q8N4W9 903 aaPredicted RBP12.21□□□□□ -0.45
SDC1-201ENST00000254351 MBD3L1Q8WWY6 194 aa12.21□□□□□ -0.45
SDC1-201ENST00000254351 OR6C1Q96RD1 312 aa12.21□□□□□ -0.45
SDC1-201ENST00000254351 VAMP8Q9BV40 100 aa12.21□□□□□ -0.45
SDC1-201ENST00000254351 SERF1AO75920 110 aa12.21□□□□□ -0.46
SDC1-201ENST00000254351 FUT6P51993 359 aa12.21□□□□□ -0.46
SDC1-201ENST00000254351 PPP1CBP62140 327 aa12.21□□□□□ -0.46
SDC1-201ENST00000254351 MRPS11P82912 194 aaKnown RBP12.21□□□□□ -0.46
SDC1-201ENST00000254351 ASPHD1Q5U4P2 390 aa12.21□□□□□ -0.46
SDC1-201ENST00000254351 ZNF573Q86YE8 665 aa12.21□□□□□ -0.46
SDC1-201ENST00000254351 P2RX4Q99571 388 aa12.21□□□□□ -0.46
SDC1-201ENST00000254351 PTRH2Q9Y3E5 179 aaKnown RBP12.21□□□□□ -0.46
SDC1-201ENST00000254351 IGHV1OR21-1A0A087WYE8 117 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 IGKV1-5P01602 117 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 SERPINA7P05543 415 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 CD82P27701 267 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 S100A7P31151 101 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 KCNMB1Q16558 191 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 CEACAM16Q2WEN9 425 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 ZDHHC16Q969W1 377 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 RAB40CQ96S21 281 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 SRXN1Q9BYN0 137 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 SVILO95425 2214 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 SYNGR3O43761 229 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 CTSSP25774 331 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 HOXA4Q00056 320 aaPredicted RBP12.2□□□□□ -0.46
SDC1-201ENST00000254351 OR5D13Q8NGL4 314 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 PLPPR2Q96GM1 343 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 PYGO2Q9BRQ0 406 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 RNF114Q9Y508 228 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 ATP23Q9Y6H3 246 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 TP53I11O14683 189 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 DRD1P21728 446 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 OTX1P32242 354 aaPredicted RBP12.2□□□□□ -0.46
SDC1-201ENST00000254351 RAB7AP51149 207 aa12.2□□□□□ -0.46
SDC1-201ENST00000254351 COA6Q5JTJ3 125 aaKnown RBP12.2□□□□□ -0.46
SDC1-201ENST00000254351 NFAM1Q8NET5 270 aaPredicted RBP12.2□□□□□ -0.46
SDC1-201ENST00000254351 CIB3Q96Q77 187 aaPredicted RBP12.2□□□□□ -0.46
SDC1-201ENST00000254351 A0A0J9YW62 118 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 H0Y980 276 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 CCL3P10147 92 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 HOXA6P31267 233 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 G6PCP35575 357 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 SUMO3P55854 103 aaPredicted RBP12.19□□□□□ -0.46
SDC1-201ENST00000254351 EDDM3BP56851 147 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 TGIF2LYQ8IUE0 185 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 IFI44Q8TCB0 444 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 CLDN23Q96B33 292 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 WNT10AQ9GZT5 417 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 MTCH1Q9NZJ7 389 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 MRPS18CQ9Y3D5 142 aaKnown RBP12.19□□□□□ -0.46
SDC1-201ENST00000254351 DUXBA0A1W2PPF3 345 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 SH2D1BO14796 132 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 S100GP29377 79 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 CHRNB4P30926 498 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 CISD2Q8N5K1 135 aaKnown RBP12.19□□□□□ -0.46
SDC1-201ENST00000254351 ZIC4Q8N9L1 334 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 OR1L1Q8NH94 360 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 RNASE8Q8TDE3 154 aaKnown RBP12.19□□□□□ -0.46
SDC1-201ENST00000254351 PSMF1Q92530 271 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 TMEM106BQ9NUM4 274 aa12.19□□□□□ -0.46
SDC1-201ENST00000254351 AHCTF1Q8WYP5 2266 aa12.18□□□□□ -0.46
SDC1-201ENST00000254351 KIR2DL5BA0A0G2JN68 375 aa12.18□□□□□ -0.46
SDC1-201ENST00000254351 KIR2DL5BA0A0G2JPC4 375 aa12.18□□□□□ -0.46
SDC1-201ENST00000254351 LILRA5A6NI73 299 aa12.18□□□□□ -0.46
SDC1-201ENST00000254351 RBFOX2O43251 390 aaKnown RBP eCLIP12.18□□□□□ -0.46
SDC1-201ENST00000254351 ZFAND5O76080 213 aa12.18□□□□□ -0.46
SDC1-201ENST00000254351 PMCHP20382 165 aa12.18□□□□□ -0.46
SDC1-201ENST00000254351 CRYGSP22914 178 aa12.18□□□□□ -0.46
SDC1-201ENST00000254351 PDLIM4P50479 330 aa12.18□□□□□ -0.46
SDC1-201ENST00000254351 KIR2DL5AQ8N109 375 aa12.18□□□□□ -0.46
SDC1-201ENST00000254351 CADM4Q8NFZ8 388 aa12.18□□□□□ -0.46
SDC1-201ENST00000254351 TMEM9BQ9NQ34 198 aa12.18□□□□□ -0.46
SDC1-201ENST00000254351 RNF24Q9Y225 148 aa12.18□□□□□ -0.46
SDC1-201ENST00000254351 LOC102725191A0A1B0GVB3 256 aa12.18□□□□□ -0.46
SDC1-201ENST00000254351 TOX3O15405 576 aaPredicted RBP12.18□□□□□ -0.46
SDC1-201ENST00000254351 RAMP3O60896 148 aa12.18□□□□□ -0.46
SDC1-201ENST00000254351 PLXDC1Q8IUK5 500 aa12.18□□□□□ -0.46
SDC1-201ENST00000254351 SPACA9Q96E40 222 aaPredicted RBP12.18□□□□□ -0.46
SDC1-201ENST00000254351 NEIL1Q96FI4 390 aaPredicted RBP12.18□□□□□ -0.46
SDC1-201ENST00000254351 ZNF703Q9H7S9 590 aaPredicted RBP12.18□□□□□ -0.46
SDC1-201ENST00000254351 LOC102724200A0A096LPH7 203 aaPredicted RBP12.17□□□□□ -0.46
SDC1-201ENST00000254351 SRFP11831 508 aa12.17□□□□□ -0.46
SDC1-201ENST00000254351 ZNF90Q03938 601 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms