RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 NCMAPQ5T1S8 102 aa11.6□□□□□ -0.55
LDLR-201ENST00000252444 TMEM42Q69YG0 159 aa11.6□□□□□ -0.55
LDLR-201ENST00000252444 YPEL2Q96QA6 119 aa11.6□□□□□ -0.55
LDLR-201ENST00000252444 RNF5Q99942 180 aa11.6□□□□□ -0.55
LDLR-201ENST00000252444 PLA2G10O15496 165 aa11.6□□□□□ -0.55
LDLR-201ENST00000252444 MISP3Q96FF7 219 aa11.6□□□□□ -0.55
LDLR-201ENST00000252444 NOTCH4Q99466 2003 aa11.6□□□□□ -0.55
LDLR-201ENST00000252444 ABCA7Q8IZY2 2146 aa11.6□□□□□ -0.55
LDLR-201ENST00000252444 A0A1W2PS18 150 aa11.6□□□□□ -0.55
LDLR-201ENST00000252444 SEC11BP0C7V7 166 aa11.6□□□□□ -0.55
LDLR-201ENST00000252444 UBE2G2P60604 165 aa11.6□□□□□ -0.55
LDLR-201ENST00000252444 ZNF674Q2M3X9 581 aa11.6□□□□□ -0.55
LDLR-201ENST00000252444 MED9Q9NWA0 146 aa11.6□□□□□ -0.55
LDLR-201ENST00000252444 RPS11P62280 158 aaKnown RBP eCLIP11.6□□□□□ -0.55
LDLR-201ENST00000252444 NARFLQ9H6Q4 476 aa11.6□□□□□ -0.55
LDLR-201ENST00000252444 VSIG4Q9Y279 399 aa11.6□□□□□ -0.55
LDLR-201ENST00000252444 CYB5R3P00387 301 aaPredicted RBP11.59□□□□□ -0.55
LDLR-201ENST00000252444 ABHD12Q8N2K0 398 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 RGP1Q92546 391 aaPredicted RBP11.59□□□□□ -0.55
LDLR-201ENST00000252444 WSB1Q9Y6I7 421 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 PPP1CCP36873 323 aaKnown RBP11.59□□□□□ -0.55
LDLR-201ENST00000252444 RPL8P62917 257 aaKnown RBP11.59□□□□□ -0.55
LDLR-201ENST00000252444 H1FOOQ8IZA3 346 aaPredicted RBP11.59□□□□□ -0.55
LDLR-201ENST00000252444 WDR61Q9GZS3 305 aaKnown RBP11.59□□□□□ -0.55
LDLR-201ENST00000252444 IFT22Q9H7X7 185 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 J3QR06 171 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 SPNP16150 400 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 MMDQ15546 238 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 TMEM155Q4W5P6 130 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 FFAR4Q5NUL3 377 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 FAM122CQ6P4D5 195 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 OR1L1Q8NH94 360 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.59□□□□□ -0.55
LDLR-201ENST00000252444 OR7C2O60412 319 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 PGLYRP1O75594 196 aaPredicted RBP11.59□□□□□ -0.55
LDLR-201ENST00000252444 IGKV3-15P01624 115 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 TMEM11P17152 192 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 ID1P41134 155 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 SPNS3Q6ZMD2 512 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 BVESQ8NE79 360 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 GALNT14Q96FL9 552 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 ELOVL1Q9BW60 279 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 MAGT1Q9H0U3 335 aa11.59□□□□□ -0.55
LDLR-201ENST00000252444 A0A0G2JK05 382 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 CDC34P49427 236 aaPredicted RBP11.58□□□□□ -0.56
LDLR-201ENST00000252444 DHRS11Q6UWP2 260 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 Q6ZS49 121 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 OR5C1Q8NGR4 320 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 OR5B3Q8NH48 314 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 ACY3Q96HD9 319 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 COA4Q9NYJ1 87 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 HPXP02790 462 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 ZNF250P15622 560 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 GATA3P23771 443 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 AKR1D1P51857 326 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 SPRY4Q9C004 299 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 GNG7O60262 68 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 OR2A4O95047 310 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 TMEM41BQ5BJD5 291 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 DCAF12L2Q5VW00 463 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 OR2A7Q96R45 310 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 DPM3Q9P2X0 92 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 A0A0G2JNJ9 132 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 NUPL2O15504 423 aaKnown RBP11.58□□□□□ -0.56
LDLR-201ENST00000252444 RBP4P02753 201 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 SP6Q3SY56 376 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 TEPPQ6URK8 271 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 STPG3Q8N7X2 389 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 SLC24A4Q8NFF2 622 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 Q9UFV3 132 aa11.58□□□□□ -0.56
LDLR-201ENST00000252444 ZNF785A8K8V0 405 aa11.57□□□□□ -0.56
LDLR-201ENST00000252444 OR10J4P0C629 311 aa11.57□□□□□ -0.56
LDLR-201ENST00000252444 PAFAH1B2P68402 229 aa11.57□□□□□ -0.56
LDLR-201ENST00000252444 SMIM8Q96KF7 97 aa11.57□□□□□ -0.56
LDLR-201ENST00000252444 M0R1W7 72 aa11.57□□□□□ -0.56
LDLR-201ENST00000252444 P2RY4P51582 365 aa11.57□□□□□ -0.56
LDLR-201ENST00000252444 HSPE1P61604 102 aaKnown RBP11.57□□□□□ -0.56
LDLR-201ENST00000252444 ZNF488Q96MN9 340 aa11.57□□□□□ -0.56
LDLR-201ENST00000252444 KCNK15Q9H427 330 aa11.57□□□□□ -0.56
LDLR-201ENST00000252444 SIGLEC5O15389 551 aa11.57□□□□□ -0.56
LDLR-201ENST00000252444 PSG2P11465 335 aa11.57□□□□□ -0.56
LDLR-201ENST00000252444 RAB4BP61018 213 aa11.57□□□□□ -0.56
LDLR-201ENST00000252444 PCGF1Q9BSM1 259 aa11.57□□□□□ -0.56
LDLR-201ENST00000252444 SRRM5B3KS81 715 aa11.57□□□□□ -0.56
LDLR-201ENST00000252444 ITGB1BP1O14713 200 aa11.57□□□□□ -0.56
LDLR-201ENST00000252444 PTPRSQ13332 1948 aa11.57□□□□□ -0.56
LDLR-201ENST00000252444 AGPAT2O15120 278 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 FLI1Q01543 452 aaPredicted RBP11.56□□□□□ -0.56
LDLR-201ENST00000252444 PNRC1Q12796 327 aaPredicted RBP11.56□□□□□ -0.56
LDLR-201ENST00000252444 TEX261Q6UWH6 196 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 Q8TCH9 128 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 MINOS1Q5TGZ0 78 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 ZNF680Q8NEM1 530 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 TMED6Q8WW62 240 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 MRPL37Q9BZE1 423 aaKnown RBP11.56□□□□□ -0.56
LDLR-201ENST00000252444 PNRC2Q9NPJ4 139 aaKnown RBP11.56□□□□□ -0.56
LDLR-201ENST00000252444 MINOS1-NBL1R4GNA1 71 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 COL4A3Q01955 1670 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 BTNL8Q6UX41 500 aa11.56□□□□□ -0.56
LDLR-201ENST00000252444 SSC4DQ8WTU2 575 aa11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 121.4 ms