RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 CEACAM18A8MTB9 384 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 DXOO77932 396 aaKnown RBP3.09□□□□□ -1.91
SCN1A-221ENST00000641996 RRADP55042 308 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 RCHY1Q96PM5 261 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 DUSP23Q9BVJ7 150 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 PBX4Q9BYU1 374 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 POLR2J2Q9GZM3 115 aaKnown RBP3.09□□□□□ -1.91
SCN1A-221ENST00000641996 LINC00597Q9H2U6 94 aa3.09□□□□□ -1.91
SCN1A-221ENST00000641996 SDR39U1Q9NRG7 319 aaPredicted RBP3.09□□□□□ -1.91
SCN1A-221ENST00000641996 FN1P02751 2386 aaKnown RBP3.09□□□□□ -1.92
SCN1A-221ENST00000641996 METP08581 1390 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 SYNMO15061 1565 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 A0A1W2PPI3 338 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 PSG7Q13046 419 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 DEFB115Q30KQ5 88 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 NHLRC3Q5JS37 347 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 ABHD12Q8N2K0 398 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 OR1F12Q8NHA8 337 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 SFXN1Q9H9B4 322 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 OVOS2A0A0J9YW53 1432 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 OVOS2Q6IE36 1432 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 MYADML2A6NDP7 307 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 MMP23AO75900 390 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 GABARAPO95166 117 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 MOSP00540 346 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 XGP55808 180 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 RPL27P61353 136 aaKnown RBP3.09□□□□□ -1.92
SCN1A-221ENST00000641996 HHEXQ03014 270 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 TBR1Q16650 682 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 GBGT1Q8N5D6 347 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 JPT2Q9H910 190 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 NOX4Q9NPH5 578 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 RGPD3A6NKT7 1758 aaPredicted RBP3.09□□□□□ -1.92
SCN1A-221ENST00000641996 H7C1H1 209 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 FGF1P05230 155 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 HOXB9P17482 250 aaPredicted RBP3.09□□□□□ -1.92
SCN1A-221ENST00000641996 CPSF1Q10570 1443 aaKnown RBP3.09□□□□□ -1.92
SCN1A-221ENST00000641996 SFXN4Q6P4A7 337 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF534Q76KX8 674 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 TMEM86AQ8N2M4 240 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 LILRA3Q8N6C8 439 aaPredicted RBP3.09□□□□□ -1.92
SCN1A-221ENST00000641996 OR4C16Q8NGL9 310 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 SLIRPQ9GZT3 109 aaKnown RBP3.09□□□□□ -1.92
SCN1A-221ENST00000641996 SPHK2Q9NRA0 654 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 CFAP43Q8NDM7 1665 aa3.09□□□□□ -1.92
SCN1A-221ENST00000641996 FAM90A18PA6NE21 464 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 FAM90A16PA6NEW6 464 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 CRYM-AS1A6NIL9 109 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 FAM90A9PA6NNJ1 464 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 FAM90A5PA8MXJ8 464 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 FAM90A15PP0C7V4 464 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 FAM90A14PP0C7W9 464 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 TIMP3P35625 211 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF90Q03938 601 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 PTCRAQ6ISU1 281 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 TDHQ8IZJ6 230 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 PRDM14Q9GZV8 571 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 KLF13Q9Y2Y9 288 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 FAHP16930 419 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 GPR6P46095 362 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 FKBP1AP62942 108 aaKnown RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 HLA-DQA1Q5Y7H0 255 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 ZADH2Q8N4Q0 377 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 TMEM178AQ8NBL3 297 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 EMG1Q92979 244 aaKnown RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 MRGPRX3Q96LB0 322 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 CCDC140Q96MF4 163 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 METTL26Q96S19 204 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 C20orf144Q9BQM9 153 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 MESP1Q9BRJ9 268 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 ANKARQ7Z5J8 1434 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 TRAPPC8Q9Y2L5 1435 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 PRSS29PA6NIE9 313 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 ZNF670-ZNF695F2Z2N8 137 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 RPL8P62917 257 aaKnown RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 KIAA1644Q3SXP7 199 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 RNF128Q8TEB7 428 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 GPX7Q96SL4 187 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 NFASCO94856 1347 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 KIR2DL5BA0A0G2JN68 375 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 KIR2DL5BA0A0G2JPC4 375 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 A0A1W2PRE2 83 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 TAPBPO15533 448 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 MT-ATP8P03928 68 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 SLC25A5P05141 298 aaKnown RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 KIR2DL2P43627 348 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 FBXW4P57775 412 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 FCRL6Q6DN72 434 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 PARM1Q6UWI2 310 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 PNPLA5Q7Z6Z6 429 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 KIR2DL5AQ8N109 375 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 D2HGDHQ8N465 521 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 RNF149Q8NC42 400 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 CTHRC1Q96CG8 243 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 PRADC1Q9BSG0 188 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 CD109Q6YHK3 1445 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 K7ERJ3 54 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 FGF10O15520 208 aaPredicted RBP3.08□□□□□ -1.92
SCN1A-221ENST00000641996 CSN1S1P47710 185 aa3.08□□□□□ -1.92
SCN1A-221ENST00000641996 LHX2P50458 406 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms