RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 TM2D3Q9BRN9 247 aa14.97□□□□□ -0.01
CLN3-262ENST00000637699 TAF9BQ9HBM6 251 aa14.97□□□□□ -0.01
CLN3-262ENST00000637699 RCC2Q9P258 522 aaKnown RBP14.97□□□□□ -0.01
CLN3-262ENST00000637699 FBXO7Q9Y3I1 522 aa14.97□□□□□ -0.01
CLN3-262ENST00000637699 PEX16Q9Y5Y5 336 aa14.97□□□□□ -0.01
CLN3-262ENST00000637699 HYDINQ4G0P3 5121 aa14.97□□□□□ -0.01
CLN3-262ENST00000637699 LDLRAD4O15165 306 aa14.96□□□□□ -0.01
CLN3-262ENST00000637699 SOX15O60248 233 aa14.96□□□□□ -0.01
CLN3-262ENST00000637699 TTC23Q5W5X9 447 aa14.96□□□□□ -0.01
CLN3-262ENST00000637699 RPL22L1Q6P5R6 122 aaKnown RBP14.96□□□□□ -0.01
CLN3-262ENST00000637699 ADAMTSL5Q6ZMM2 481 aa14.96□□□□□ -0.01
CLN3-262ENST00000637699 PACRGLQ8N7B6 248 aa14.96□□□□□ -0.01
CLN3-262ENST00000637699 ISOC1Q96CN7 298 aa14.96□□□□□ -0.01
CLN3-262ENST00000637699 OR4C12Q96R67 309 aa14.96□□□□□ -0.01
CLN3-262ENST00000637699 ABHD14AQ9BUJ0 271 aa14.96□□□□□ -0.01
CLN3-262ENST00000637699 TPSG1Q9NRR2 321 aa14.96□□□□□ -0.01
CLN3-262ENST00000637699 KIAA1456Q9P272 454 aa14.96□□□□□ -0.01
CLN3-262ENST00000637699 ERGIC3Q9Y282 383 aa14.96□□□□□ -0.01
CLN3-262ENST00000637699 A3GALT2U3KPV4 340 aa14.96□□□□□ -0.01
CLN3-262ENST00000637699 LGALS1P09382 135 aaKnown RBP14.95□□□□□ -0.02
CLN3-262ENST00000637699 OR8U9P0C7N5 309 aa14.95□□□□□ -0.02
CLN3-262ENST00000637699 IGHV4-30-4P0DP06 118 aa14.95□□□□□ -0.02
CLN3-262ENST00000637699 DCKP27707 260 aa14.95□□□□□ -0.02
CLN3-262ENST00000637699 PPP1CCP36873 323 aaKnown RBP14.95□□□□□ -0.02
CLN3-262ENST00000637699 PITPNAQ00169 270 aa14.95□□□□□ -0.02
CLN3-262ENST00000637699 NDPQ00604 133 aa14.95□□□□□ -0.02
CLN3-262ENST00000637699 RIPK1Q13546 671 aa14.95□□□□□ -0.02
CLN3-262ENST00000637699 GPR176Q14439 515 aa14.95□□□□□ -0.02
CLN3-262ENST00000637699 OR2G6Q5TZ20 316 aa14.95□□□□□ -0.02
CLN3-262ENST00000637699 TRAT1Q6PIZ9 186 aa14.95□□□□□ -0.02
CLN3-262ENST00000637699 HAPLN4Q86UW8 402 aa14.95□□□□□ -0.02
CLN3-262ENST00000637699 ODF3L1Q8IXM7 274 aa14.95□□□□□ -0.02
CLN3-262ENST00000637699 DHRSXQ8N5I4 330 aa14.95□□□□□ -0.02
CLN3-262ENST00000637699 OR13C5Q8NGS8 318 aa14.95□□□□□ -0.02
CLN3-262ENST00000637699 CYYR1Q96J86 154 aa14.95□□□□□ -0.02
CLN3-262ENST00000637699 C8orf4Q9NR00 106 aa14.95□□□□□ -0.02
CLN3-262ENST00000637699 FOXA2Q9Y261 457 aaPredicted RBP14.95□□□□□ -0.02
CLN3-262ENST00000637699 MRPS28Q9Y2Q9 187 aaKnown RBP14.95□□□□□ -0.02
CLN3-262ENST00000637699 UBE2QL1A1L167 161 aa14.94□□□□□ -0.02
CLN3-262ENST00000637699 IGHV3-11P01762 117 aa14.94□□□□□ -0.02
CLN3-262ENST00000637699 OR3A3P47888 321 aa14.94□□□□□ -0.02
CLN3-262ENST00000637699 CCDC58Q4VC31 144 aa14.94□□□□□ -0.02
CLN3-262ENST00000637699 C19orf54Q5BKX5 351 aa14.94□□□□□ -0.02
CLN3-262ENST00000637699 GAPTQ8N292 157 aa14.94□□□□□ -0.02
CLN3-262ENST00000637699 NPBQ8NG41 125 aa14.94□□□□□ -0.02
CLN3-262ENST00000637699 MUL1Q969V5 352 aa14.94□□□□□ -0.02
CLN3-262ENST00000637699 CST11Q9H112 138 aa14.94□□□□□ -0.02
CLN3-262ENST00000637699 BANF2Q9H503 90 aa14.94□□□□□ -0.02
CLN3-262ENST00000637699 EDA2RQ9HAV5 297 aa14.94□□□□□ -0.02
CLN3-262ENST00000637699 KCNIP1Q9NZI2 227 aa14.94□□□□□ -0.02
CLN3-262ENST00000637699 CLEC2DQ9UHP7 191 aa14.94□□□□□ -0.02
CLN3-262ENST00000637699 GNAO1P09471 354 aa14.93□□□□□ -0.02
CLN3-262ENST00000637699 IGFBP3P17936 291 aaPredicted RBP14.93□□□□□ -0.02
CLN3-262ENST00000637699 GLIPR1L1Q6UWM5 242 aa14.93□□□□□ -0.02
CLN3-262ENST00000637699 Q8N1Y9 231 aa14.93□□□□□ -0.02
CLN3-262ENST00000637699 ABHD5Q8WTS1 349 aa14.93□□□□□ -0.02
CLN3-262ENST00000637699 FBXL15Q9H469 300 aa14.93□□□□□ -0.02
CLN3-262ENST00000637699 DIMT1Q9UNQ2 313 aaKnown RBP14.93□□□□□ -0.02
CLN3-262ENST00000637699 NDUFA3O95167 84 aa14.92□□□□□ -0.02
CLN3-262ENST00000637699 LALBAP00709 142 aa14.92□□□□□ -0.02
CLN3-262ENST00000637699 HSPB1P04792 205 aaKnown RBP14.92□□□□□ -0.02
CLN3-262ENST00000637699 CX3CL1P78423 397 aa14.92□□□□□ -0.02
CLN3-262ENST00000637699 OGFRL1Q5TC84 451 aaPredicted RBP14.92□□□□□ -0.02
CLN3-262ENST00000637699 ZNF660Q6AZW8 331 aaPredicted RBP14.92□□□□□ -0.02
CLN3-262ENST00000637699 LAIR2Q6ISS4 152 aa14.92□□□□□ -0.02
CLN3-262ENST00000637699 TMPRSS11AQ6ZMR5 421 aa14.92□□□□□ -0.02
CLN3-262ENST00000637699 ZNF833PQ6ZTB9 187 aa14.92□□□□□ -0.02
CLN3-262ENST00000637699 JAGN1Q8N5M9 183 aa14.92□□□□□ -0.02
CLN3-262ENST00000637699 SETD9Q8NE22 299 aa14.92□□□□□ -0.02
CLN3-262ENST00000637699 GGHQ92820 318 aa14.92□□□□□ -0.02
CLN3-262ENST00000637699 MRPS24Q96EL2 167 aaKnown RBP14.92□□□□□ -0.02
CLN3-262ENST00000637699 MS4A10Q96PG2 267 aa14.92□□□□□ -0.02
CLN3-262ENST00000637699 SELENOIQ9C0D9 397 aa14.92□□□□□ -0.02
CLN3-262ENST00000637699 BABAM2Q9NXR7 383 aa14.92□□□□□ -0.02
CLN3-262ENST00000637699 JPT1Q9UK76 154 aa14.92□□□□□ -0.02
CLN3-262ENST00000637699 TRAV8-7A0A075B6U6 113 aa14.91□□□□□ -0.02
CLN3-262ENST00000637699 SAA2-SAA4A0A096LPE2 208 aa14.91□□□□□ -0.02
CLN3-262ENST00000637699 IRGMA1A4Y4 181 aa14.91□□□□□ -0.02
CLN3-262ENST00000637699 FCN1O00602 326 aa14.91□□□□□ -0.02
CLN3-262ENST00000637699 CASQ2O14958 399 aaPredicted RBP14.91□□□□□ -0.02
CLN3-262ENST00000637699 OGG1O15527 345 aa14.91□□□□□ -0.02
CLN3-262ENST00000637699 CA11O75493 328 aa14.91□□□□□ -0.02
CLN3-262ENST00000637699 SC5DO75845 299 aa14.91□□□□□ -0.02
CLN3-262ENST00000637699 MAS1P04201 325 aa14.91□□□□□ -0.02
CLN3-262ENST00000637699 SAA2P0DJI9 122 aaPredicted RBP14.91□□□□□ -0.02
CLN3-262ENST00000637699 PLGLAQ15195 96 aa14.91□□□□□ -0.02
CLN3-262ENST00000637699 FLYWCH2Q96CP2 140 aaKnown RBP14.91□□□□□ -0.02
CLN3-262ENST00000637699 TMEM80Q96HE8 168 aa14.91□□□□□ -0.02
CLN3-262ENST00000637699 RSRP1Q9BUV0 290 aa14.91□□□□□ -0.02
CLN3-262ENST00000637699 MBNL3Q9NUK0 354 aaKnown RBP14.91□□□□□ -0.02
CLN3-262ENST00000637699 C19orf73Q9NVV2 129 aa14.91□□□□□ -0.02
CLN3-262ENST00000637699 CKLFQ9UBR5 152 aa14.91□□□□□ -0.02
CLN3-262ENST00000637699 EXOSC1Q9Y3B2 195 aaKnown RBP14.91□□□□□ -0.02
CLN3-262ENST00000637699 NUBP2Q9Y5Y2 271 aa14.91□□□□□ -0.02
CLN3-262ENST00000637699 A0A1W2PPK0 400 aa14.9□□□□□ -0.02
CLN3-262ENST00000637699 YPEL1O60688 119 aa14.9□□□□□ -0.02
CLN3-262ENST00000637699 EGR2P11161 476 aaPredicted RBP14.9□□□□□ -0.02
CLN3-262ENST00000637699 MYL12AP19105 171 aa14.9□□□□□ -0.02
CLN3-262ENST00000637699 FUT3P21217 361 aa14.9□□□□□ -0.02
CLN3-262ENST00000637699 CAPGP40121 348 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms