RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 STEAP3Q658P3 488 aa14.36□□□□□ -0.11
CLN3-247ENST00000636351 MZT2AQ6P582 158 aa14.36□□□□□ -0.11
CLN3-247ENST00000636351 NUDCD2Q8WVJ2 157 aa14.36□□□□□ -0.11
CLN3-247ENST00000636351 ACOT12Q8WYK0 555 aa14.36□□□□□ -0.11
CLN3-247ENST00000636351 MAFIPQ8WZ33 124 aa14.36□□□□□ -0.11
CLN3-247ENST00000636351 ISOC1Q96CN7 298 aa14.36□□□□□ -0.11
CLN3-247ENST00000636351 VPREB3Q9UKI3 123 aa14.36□□□□□ -0.11
CLN3-247ENST00000636351 ELF5Q9UKW6 265 aaPredicted RBP14.36□□□□□ -0.11
CLN3-247ENST00000636351 RNF114Q9Y508 228 aa14.36□□□□□ -0.11
CLN3-247ENST00000636351 TRDCB7Z8K6 153 aa14.35□□□□□ -0.11
CLN3-247ENST00000636351 HSPA12AO43301 675 aa14.35□□□□□ -0.11
CLN3-247ENST00000636351 GPR137BO60478 399 aa14.35□□□□□ -0.11
CLN3-247ENST00000636351 RPL15P61313 204 aaKnown RBP14.35□□□□□ -0.11
CLN3-247ENST00000636351 HTD2P86397 168 aa14.35□□□□□ -0.11
CLN3-247ENST00000636351 LY6EQ16553 131 aa14.35□□□□□ -0.11
CLN3-247ENST00000636351 DTX3Q8N9I9 347 aa14.35□□□□□ -0.11
CLN3-247ENST00000636351 S100A16Q96FQ6 103 aaKnown RBP14.35□□□□□ -0.11
CLN3-247ENST00000636351 ABCG5Q9H222 651 aa14.35□□□□□ -0.11
CLN3-247ENST00000636351 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP14.35□□□□□ -0.11
CLN3-247ENST00000636351 SLC23A1Q9UHI7 598 aa14.35□□□□□ -0.11
CLN3-247ENST00000636351 ZNF230Q9UIE0 474 aaPredicted RBP14.35□□□□□ -0.11
CLN3-247ENST00000636351 SLC31A2O15432 143 aa14.34□□□□□ -0.11
CLN3-247ENST00000636351 SCTP09683 121 aa14.34□□□□□ -0.11
CLN3-247ENST00000636351 ZNF182P17025 639 aaPredicted RBP14.34□□□□□ -0.11
CLN3-247ENST00000636351 DTYMKP23919 212 aa14.34□□□□□ -0.11
CLN3-247ENST00000636351 MNDAP41218 407 aa14.34□□□□□ -0.11
CLN3-247ENST00000636351 KIR2DS4P43632 304 aa14.34□□□□□ -0.11
CLN3-247ENST00000636351 PITPNAQ00169 270 aa14.34□□□□□ -0.11
CLN3-247ENST00000636351 KIR2DS1Q14954 304 aa14.34□□□□□ -0.11
CLN3-247ENST00000636351 AANATQ16613 207 aa14.34□□□□□ -0.11
CLN3-247ENST00000636351 PNLIPRP3Q17RR3 467 aa14.34□□□□□ -0.11
CLN3-247ENST00000636351 ZNF260Q3ZCT1 412 aa14.34□□□□□ -0.11
CLN3-247ENST00000636351 Q3ZCU0 254 aa14.34□□□□□ -0.11
CLN3-247ENST00000636351 TMEM69Q5SWH9 247 aa14.34□□□□□ -0.11
CLN3-247ENST00000636351 CCDC144NLQ6NUI1 221 aa14.34□□□□□ -0.11
CLN3-247ENST00000636351 LINC01006Q8NI28 216 aa14.34□□□□□ -0.11
CLN3-247ENST00000636351 ABHD14AQ9BUJ0 271 aa14.34□□□□□ -0.11
CLN3-247ENST00000636351 FAM25AB3EWG3 89 aa14.33□□□□□ -0.12
CLN3-247ENST00000636351 FAM25CB3EWG5 89 aa14.33□□□□□ -0.12
CLN3-247ENST00000636351 FAM25GB3EWG6 89 aa14.33□□□□□ -0.12
CLN3-247ENST00000636351 H3BMQ9 156 aa14.33□□□□□ -0.12
CLN3-247ENST00000636351 HSD17B6O14756 317 aa14.33□□□□□ -0.12
CLN3-247ENST00000636351 FABP7O15540 132 aa14.33□□□□□ -0.12
CLN3-247ENST00000636351 EIF4EP06730 217 aaKnown RBP14.33□□□□□ -0.12
CLN3-247ENST00000636351 RAB13P51153 203 aa14.33□□□□□ -0.12
CLN3-247ENST00000636351 MORN2Q502X0 79 aa14.33□□□□□ -0.12
CLN3-247ENST00000636351 LINC00311Q8N616 119 aa14.33□□□□□ -0.12
CLN3-247ENST00000636351 C8orf31Q8N9H6 132 aa14.33□□□□□ -0.12
CLN3-247ENST00000636351 OR2AK2Q8NG84 335 aa14.33□□□□□ -0.12
CLN3-247ENST00000636351 ST6GALNAC5Q9BVH7 336 aa14.33□□□□□ -0.12
CLN3-247ENST00000636351 OR1A1Q9P1Q5 309 aa14.33□□□□□ -0.12
CLN3-247ENST00000636351 VGLL3A8MV65 326 aa14.32□□□□□ -0.12
CLN3-247ENST00000636351 OOSP1A8MZH6 123 aa14.32□□□□□ -0.12
CLN3-247ENST00000636351 BET1O15155 118 aa14.32□□□□□ -0.12
CLN3-247ENST00000636351 XRCC3O43542 346 aa14.32□□□□□ -0.12
CLN3-247ENST00000636351 YPEL1O60688 119 aa14.32□□□□□ -0.12
CLN3-247ENST00000636351 HPGDSO60760 199 aa14.32□□□□□ -0.12
CLN3-247ENST00000636351 ZBTB25P24278 435 aa14.32□□□□□ -0.12
CLN3-247ENST00000636351 BRS3P32247 399 aa14.32□□□□□ -0.12
CLN3-247ENST00000636351 REG1BP48304 166 aa14.32□□□□□ -0.12
CLN3-247ENST00000636351 CT45A1Q5HYN5 189 aa14.32□□□□□ -0.12
CLN3-247ENST00000636351 DHRS7BQ6IAN0 325 aaPredicted RBP14.32□□□□□ -0.12
CLN3-247ENST00000636351 SLC25A48Q6ZT89 311 aaKnown RBP14.32□□□□□ -0.12
CLN3-247ENST00000636351 LYG1Q8N1E2 194 aa14.32□□□□□ -0.12
CLN3-247ENST00000636351 ZNF439Q8NDP4 499 aa14.32□□□□□ -0.12
CLN3-247ENST00000636351 OR4A4PQ8NGN8 299 aa14.32□□□□□ -0.12
CLN3-247ENST00000636351 CT45A3Q8NHU0 189 aa14.32□□□□□ -0.12
CLN3-247ENST00000636351 YPEL2Q96QA6 119 aa14.32□□□□□ -0.12
CLN3-247ENST00000636351 OCSTAMPQ9BR26 566 aa14.32□□□□□ -0.12
CLN3-247ENST00000636351 CEPT1Q9Y6K0 416 aa14.32□□□□□ -0.12
CLN3-247ENST00000636351 WNK1Q9H4A3 2382 aa14.31□□□□□ -0.12
CLN3-247ENST00000636351 SMIM31A0A1B0GVY4 71 aa14.31□□□□□ -0.12
CLN3-247ENST00000636351 LY6LH3BQJ8 138 aa14.31□□□□□ -0.12
CLN3-247ENST00000636351 APOA1P02647 267 aa14.31□□□□□ -0.12
CLN3-247ENST00000636351 LPLP06858 475 aa14.31□□□□□ -0.12
CLN3-247ENST00000636351 RAB7AP51149 207 aa14.31□□□□□ -0.12
CLN3-247ENST00000636351 PROK1P58294 105 aa14.31□□□□□ -0.12
CLN3-247ENST00000636351 TAS2R20P59543 309 aa14.31□□□□□ -0.12
CLN3-247ENST00000636351 AUNIPQ9H7T9 357 aa14.31□□□□□ -0.12
CLN3-247ENST00000636351 CCDC59Q9P031 241 aaKnown RBP14.31□□□□□ -0.12
CLN3-247ENST00000636351 PITPNC1Q9UKF7 332 aa14.31□□□□□ -0.12
CLN3-247ENST00000636351 ST8SIA5O15466 376 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 RGS5O15539 181 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 SSX5O60225 188 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 TSPAN15O95858 294 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 GSTT2P0CG29 244 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 GSTT2BP0CG30 244 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 PTHLHP12272 177 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 CD24P25063 80 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 CEACAM6P40199 344 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 DYNLT3P51808 116 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 ZNF134P52741 427 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 DIAPH2-AS1Q14236 149 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 IGSF11Q5DX21 431 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 TMEM219Q86XT9 240 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 OR8H3Q8N146 312 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 OR10J5Q8NHC4 309 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 DYNC2LI1Q8TCX1 351 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 GINS4Q9BRT9 223 aa14.3□□□□□ -0.12
CLN3-247ENST00000636351 CABLES2Q9BTV7 478 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms