RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 CA7P43166 264 aa18.4■□□□□ 0.54
PNKP-220ENST00000627232 ASCL1P50553 236 aa18.4■□□□□ 0.54
PNKP-220ENST00000627232 EIF4EBP1Q13541 118 aaPredicted RBP18.4■□□□□ 0.54
PNKP-220ENST00000627232 EDDM3AQ14507 147 aa18.4■□□□□ 0.54
PNKP-220ENST00000627232 ZNF585BQ52M93 769 aa18.4■□□□□ 0.54
PNKP-220ENST00000627232 CXorf66Q5JRM2 361 aaPredicted RBP18.4■□□□□ 0.54
PNKP-220ENST00000627232 SDSLQ96GA7 329 aa18.4■□□□□ 0.54
PNKP-220ENST00000627232 CFAP47Q6ZTR5 3102 aa18.4■□□□□ 0.54
PNKP-220ENST00000627232 TNFRSF1AP19438 455 aa18.39■□□□□ 0.54
PNKP-220ENST00000627232 POLR2GP62487 172 aaKnown RBP eCLIP18.39■□□□□ 0.54
PNKP-220ENST00000627232 VAMP2P63027 116 aa18.39■□□□□ 0.54
PNKP-220ENST00000627232 CATR1Q13166 79 aa18.39■□□□□ 0.54
PNKP-220ENST00000627232 ST6GALNAC3Q8NDV1 305 aa18.39■□□□□ 0.54
PNKP-220ENST00000627232 WFIKKN1Q96NZ8 548 aa18.39■□□□□ 0.54
PNKP-220ENST00000627232 SLC25A31Q9H0C2 315 aa18.39■□□□□ 0.54
PNKP-220ENST00000627232 MGAQ8IWI9 3026 aa18.39■□□□□ 0.53
PNKP-220ENST00000627232 A0A0G2JRQ6 117 aa18.39■□□□□ 0.53
PNKP-220ENST00000627232 KRBOX1C9JBD0 128 aa18.39■□□□□ 0.53
PNKP-220ENST00000627232 PPP1CCP36873 323 aaKnown RBP18.39■□□□□ 0.53
PNKP-220ENST00000627232 STUMQ69YW2 141 aa18.39■□□□□ 0.53
PNKP-220ENST00000627232 RNASE11Q8TAA1 199 aaKnown RBP18.39■□□□□ 0.53
PNKP-220ENST00000627232 EDARADDQ8WWZ3 215 aa18.39■□□□□ 0.53
PNKP-220ENST00000627232 SAT2Q96F10 170 aaPredicted RBP18.39■□□□□ 0.53
PNKP-220ENST00000627232 SMIM3Q9BZL3 60 aa18.39■□□□□ 0.53
PNKP-220ENST00000627232 RAB9BQ9NP90 201 aa18.39■□□□□ 0.53
PNKP-220ENST00000627232 LYRM2Q9NU23 88 aaPredicted RBP18.39■□□□□ 0.53
PNKP-220ENST00000627232 OR6C3Q9NZP0 311 aa18.39■□□□□ 0.53
PNKP-220ENST00000627232 JPT1Q9UK76 154 aa18.39■□□□□ 0.53
PNKP-220ENST00000627232 C17orf100A8MU93 164 aa18.38■□□□□ 0.53
PNKP-220ENST00000627232 NUDT19A8MXV4 375 aa18.38■□□□□ 0.53
PNKP-220ENST00000627232 SSSCA1O60232 199 aa18.38■□□□□ 0.53
PNKP-220ENST00000627232 IRF2P14316 349 aa18.38■□□□□ 0.53
PNKP-220ENST00000627232 MUC1P15941 1255 aaPredicted RBP18.38■□□□□ 0.53
PNKP-220ENST00000627232 ZNF16P17020 682 aaPredicted RBP18.38■□□□□ 0.53
PNKP-220ENST00000627232 EWSR1Q01844 656 aaKnown RBP eCLIP18.38■□□□□ 0.53
PNKP-220ENST00000627232 TEX36Q5VZQ5 186 aa18.38■□□□□ 0.53
PNKP-220ENST00000627232 C14orf79Q96F83 325 aa18.38■□□□□ 0.53
PNKP-220ENST00000627232 BSCL2Q96G97 398 aaPredicted RBP18.38■□□□□ 0.53
PNKP-220ENST00000627232 DCTN5Q9BTE1 182 aa18.38■□□□□ 0.53
PNKP-220ENST00000627232 FAM234AQ9H0X4 552 aa18.38■□□□□ 0.53
PNKP-220ENST00000627232 RNF150Q9ULK6 438 aa18.38■□□□□ 0.53
PNKP-220ENST00000627232 F2RL2O00254 374 aa18.37■□□□□ 0.53
PNKP-220ENST00000627232 WRBO00258 174 aa18.37■□□□□ 0.53
PNKP-220ENST00000627232 FBXL19-AS1Q494R0 122 aa18.37■□□□□ 0.53
PNKP-220ENST00000627232 NCMAPQ5T1S8 102 aa18.37■□□□□ 0.53
PNKP-220ENST00000627232 ZNF66Q6ZN08 573 aa18.37■□□□□ 0.53
PNKP-220ENST00000627232 ZNRF1Q8ND25 227 aa18.37■□□□□ 0.53
PNKP-220ENST00000627232 C5orf30Q96GV9 206 aa18.37■□□□□ 0.53
PNKP-220ENST00000627232 ESRP2Q9H6T0 727 aaKnown RBP18.37■□□□□ 0.53
PNKP-220ENST00000627232 TAS2R3Q9NYW6 316 aa18.37■□□□□ 0.53
PNKP-220ENST00000627232 LPAR3Q9UBY5 353 aa18.37■□□□□ 0.53
PNKP-220ENST00000627232 DYSFO75923 2080 aa18.37■□□□□ 0.53
PNKP-220ENST00000627232 ASPMQ8IZT6 3477 aa18.37■□□□□ 0.53
PNKP-220ENST00000627232 RAB19A4D1S5 217 aa18.36■□□□□ 0.53
PNKP-220ENST00000627232 FAM24AA6NFZ4 105 aa18.36■□□□□ 0.53
PNKP-220ENST00000627232 YPEL1O60688 119 aa18.36■□□□□ 0.53
PNKP-220ENST00000627232 IGKV1-5P01602 117 aa18.36■□□□□ 0.53
PNKP-220ENST00000627232 EPHA1P21709 976 aa18.36■□□□□ 0.53
PNKP-220ENST00000627232 LPAR6P43657 344 aa18.36■□□□□ 0.53
PNKP-220ENST00000627232 SULT1A2P50226 295 aa18.36■□□□□ 0.53
PNKP-220ENST00000627232 AKR1C2P52895 323 aa18.36■□□□□ 0.53
PNKP-220ENST00000627232 NHLH2Q02577 135 aa18.36■□□□□ 0.53
PNKP-220ENST00000627232 OR1S2Q8NGQ3 325 aa18.36■□□□□ 0.53
PNKP-220ENST00000627232 RFESDQ8TAC1 157 aa18.36■□□□□ 0.53
PNKP-220ENST00000627232 MARC2Q969Z3 335 aa18.36■□□□□ 0.53
PNKP-220ENST00000627232 YPEL2Q96QA6 119 aa18.36■□□□□ 0.53
PNKP-220ENST00000627232 GINS3Q9BRX5 216 aa18.36■□□□□ 0.53
PNKP-220ENST00000627232 ZNF665Q9H7R5 613 aa18.36■□□□□ 0.53
PNKP-220ENST00000627232 WFDC1Q9HC57 220 aa18.36■□□□□ 0.53
PNKP-220ENST00000627232 RNF115Q9Y4L5 304 aa18.36■□□□□ 0.53
PNKP-220ENST00000627232 KIAA1324LA8MWY0 1029 aaPredicted RBP18.35■□□□□ 0.53
PNKP-220ENST00000627232 ATG12O94817 140 aa18.35■□□□□ 0.53
PNKP-220ENST00000627232 CYB5R3P00387 301 aaPredicted RBP18.35■□□□□ 0.53
PNKP-220ENST00000627232 FAM209AQ5JX71 171 aa18.35■□□□□ 0.53
PNKP-220ENST00000627232 FAM201AQ5SY85 155 aa18.35■□□□□ 0.53
PNKP-220ENST00000627232 UQCC3Q6UW78 93 aa18.35■□□□□ 0.53
PNKP-220ENST00000627232 TMEM252Q8N6L7 170 aa18.35■□□□□ 0.53
PNKP-220ENST00000627232 SMIM8Q96KF7 97 aa18.35■□□□□ 0.53
PNKP-220ENST00000627232 RAB40CQ96S21 281 aa18.35■□□□□ 0.53
PNKP-220ENST00000627232 HSD17B10Q99714 261 aaKnown RBP18.35■□□□□ 0.53
PNKP-220ENST00000627232 MAGT1Q9H0U3 335 aa18.35■□□□□ 0.53
PNKP-220ENST00000627232 RAI1Q7Z5J4 1906 aaPredicted RBP18.35■□□□□ 0.53
PNKP-220ENST00000627232 DSCAMO60469 2012 aa18.35■□□□□ 0.53
PNKP-220ENST00000627232 IGHV3-43A0A0B4J1X8 118 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 IGSF23A1L1A6 192 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 LRRC30A6NM36 301 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 TEX46H3BTG2 121 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 CHST1O43916 411 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 SEC11BP0C7V7 166 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 CGB3P0DN86 165 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 CGB7P0DN87 165 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 IGHV3-43DP0DP04 118 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 CAV2P51636 162 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 BAXQ07812 192 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 MORN2Q502X0 79 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 FAM53AQ6NSI3 398 aaPredicted RBP18.34■□□□□ 0.53
PNKP-220ENST00000627232 ADAM5Q6NVV9 412 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 CLEC9AQ6UXN8 241 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 ZNF788Q6ZQV5 615 aa18.34■□□□□ 0.53
PNKP-220ENST00000627232 LINC00052Q96N35 136 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms