RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 FAM209AQ5JX71 171 aa9.82□□□□□ -0.84
CLIP1-219ENST00000620786 HCP5Q6MZN7 132 aa9.82□□□□□ -0.84
CLIP1-219ENST00000620786 DUX5Q96PT3 197 aa9.82□□□□□ -0.84
CLIP1-219ENST00000620786 TLNRD1Q9H1K6 362 aa9.82□□□□□ -0.84
CLIP1-219ENST00000620786 CEACAM18A8MTB9 384 aa9.82□□□□□ -0.84
CLIP1-219ENST00000620786 EWSR1Q01844 656 aaKnown RBP eCLIP9.82□□□□□ -0.84
CLIP1-219ENST00000620786 KLF9Q13886 244 aaPredicted RBP9.82□□□□□ -0.84
CLIP1-219ENST00000620786 RFLNBQ8N5W9 214 aa9.82□□□□□ -0.84
CLIP1-219ENST00000620786 IL22RA2Q969J5 263 aa9.82□□□□□ -0.84
CLIP1-219ENST00000620786 MRPL37Q9BZE1 423 aaKnown RBP9.82□□□□□ -0.84
CLIP1-219ENST00000620786 NIT2Q9NQR4 276 aa9.82□□□□□ -0.84
CLIP1-219ENST00000620786 CALYQ9NYX4 217 aa9.82□□□□□ -0.84
CLIP1-219ENST00000620786 CYB5R1Q9UHQ9 305 aa9.82□□□□□ -0.84
CLIP1-219ENST00000620786 MIA3Q5JRA6 1907 aa9.82□□□□□ -0.84
CLIP1-219ENST00000620786 TMSB15BA0A087X1C1 80 aa9.82□□□□□ -0.84
CLIP1-219ENST00000620786 ADAM11O75078 769 aa9.82□□□□□ -0.84
CLIP1-219ENST00000620786 FAM106AQ4KMX7 169 aa9.82□□□□□ -0.84
CLIP1-219ENST00000620786 OVCH2Q7RTZ1 564 aa9.82□□□□□ -0.84
CLIP1-219ENST00000620786 RCC2Q9P258 522 aaKnown RBP9.82□□□□□ -0.84
CLIP1-219ENST00000620786 KLK13Q9UKR3 277 aa9.82□□□□□ -0.84
CLIP1-219ENST00000620786 hCG_38984A0A1B0GV85 526 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 MFSD2BA6NFX1 497 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 WISP3O95389 354 aaPredicted RBP9.81□□□□□ -0.84
CLIP1-219ENST00000620786 CXorf1O96002 111 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 LIPFP07098 398 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 KIR2DL2P43627 348 aaPredicted RBP9.81□□□□□ -0.84
CLIP1-219ENST00000620786 GBGT1Q8N5D6 347 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 POM121Q96HA1 1249 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 NAT8Q9UHE5 227 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 ZNF107Q9UII5 783 aaPredicted RBP9.81□□□□□ -0.84
CLIP1-219ENST00000620786 RBFOX3A6NFN3 312 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 UBE2L6O14933 153 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 IGSF11Q5DX21 431 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 SPANXN1Q5VSR9 72 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 FADS6Q8N9I5 356 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 SRD5A3Q9H8P0 318 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 CLDN34H7C241 214 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 MFNGO00587 321 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 C1QCP02747 245 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 PRSS1P07477 247 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 NANOS3P60323 173 aaKnown RBP9.81□□□□□ -0.84
CLIP1-219ENST00000620786 PRSS53Q2L4Q9 553 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 RNF212Q495C1 297 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 CXorf66Q5JRM2 361 aaPredicted RBP9.81□□□□□ -0.84
CLIP1-219ENST00000620786 PNKDQ8N490 385 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 FAM57AQ8TBR7 257 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 PAXXQ9BUH6 204 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 YAE1D1Q9NRH1 226 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 GZMMP51124 257 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 FAM27E3Q08E93 113 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 LRRC75BQ2VPJ9 315 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 FAM181BA6NEQ2 426 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 ERVS71-1P61550 626 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 VWA1Q6PCB0 445 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 SEC11CQ9BY50 192 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 AP5S1Q9NUS5 200 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 SCN3AQ9NY46 2000 aa9.81□□□□□ -0.84
CLIP1-219ENST00000620786 DEDDO75618 318 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 CD1BP29016 333 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 FUT5Q11128 374 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 TMEM255AQ5JRV8 349 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 MMD2Q8IY49 270 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 RAX2Q96IS3 184 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 VAMP8Q9BV40 100 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 ZNF703Q9H7S9 590 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-219ENST00000620786 IL19Q9UHD0 177 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 RALYQ9UKM9 306 aaKnown RBP9.8□□□□□ -0.84
CLIP1-219ENST00000620786 BMPR1BO00238 502 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 CELA3AP09093 270 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 LCN2P80188 198 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 TMEM78Q5T7P6 136 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 C8orf82Q6P1X6 216 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-219ENST00000620786 CLEC7AQ9BXN2 247 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 PKIBQ9C010 78 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 LPAR5Q9H1C0 372 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 DUXBA0A1W2PPF3 345 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 CGB1A6NKQ9 187 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 CDRT15L2A8MXV6 281 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 PRSS23O95084 383 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 RECKO95980 971 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 SMIM10L1P0DMW3 83 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 RPL8P62917 257 aaKnown RBP9.8□□□□□ -0.84
CLIP1-219ENST00000620786 SMIM10Q96HG1 83 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 PARD6AQ9NPB6 346 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 ODAMA1E959 279 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 ZNF735P0CB33 412 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 HERVK_113P61574 105 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 PLAURQ03405 335 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 Q6ZT83 130 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 LEAP2Q969E1 77 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 HELTA6NFD8 242 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 SCTP09683 121 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 RANP62826 216 aaKnown RBP9.8□□□□□ -0.84
CLIP1-219ENST00000620786 FAM168AQ92567 244 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 FAM210BQ96KR6 192 aa9.8□□□□□ -0.84
CLIP1-219ENST00000620786 RFPL3SP0C7P2 107 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 SYT8Q8NBV8 401 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 OR52M1Q8NGK5 317 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 DDB2Q92466 427 aa9.79□□□□□ -0.84
CLIP1-219ENST00000620786 TMEM54Q969K7 222 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms