RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	IDO2	Q6ZQW0	420 aa		10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	NLRC3	Q7RTR2	1065 aa		10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	TCF23	Q7RTU1	214 aa		10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	OVCH2	Q7RTZ1	564 aa		10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	ARRDC1	Q8N5I2	433 aa		10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	DUSP18	Q8NEJ0	188 aa		10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	OR8B3	Q8NGG8	313 aa		10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	OR4A4P	Q8NGN8	299 aa		10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	OR13C8	Q8NGS7	320 aa		10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	OR1L1	Q8NH94	360 aa		10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	DACT3	Q96B18	629 aa	Predicted RBP	10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	OR8B2	Q96RD0	313 aa		10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	GINS4	Q9BRT9	223 aa		10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	CABLES2	Q9BTV7	478 aa		10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	C19orf12	Q9NSK7	152 aa		10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	KCNIP1	Q9NZI2	227 aa		10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	MGAT4A	Q9UM21	535 aa		10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	MMP24	Q9Y5R2	645 aa		10.37	□□□□□ -0.75
UPF1-208	ENST00000600012	TRAV6	A0A075B6T7	132 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012		A0A1B0GUS0	222 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	ARPC1B	O15143	372 aa	Known RBP	10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	NDUFB6	O95139	128 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	HBZ	P02008	142 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	TCRB	P04435	133 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	OR5H8	P0DN80	308 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	MDK	P21741	143 aa	Predicted RBP	10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	TSPAN5	P62079	268 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	PLET1	Q6UQ28	207 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	ZNF841	Q6ZN19	808 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012		Q6ZNX1	250 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	IL1F10	Q8WWZ1	152 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	ARL11	Q969Q4	196 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	MRGPRF	Q96AM1	343 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	PRRT1	Q99946	306 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	ZNF2	Q9BSG1	426 aa	Predicted RBP	10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	C20orf85	Q9H1P6	137 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	NUDT15	Q9NV35	164 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	SLC2A8	Q9NY64	477 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	OR6C3	Q9NZP0	311 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	OR1A1	Q9P1Q5	309 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	SCP2D1	Q9UJQ7	156 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	FLVCR2	Q9UPI3	526 aa		10.36	□□□□□ -0.75
UPF1-208	ENST00000600012	hCG_2014768	A0A024R1R8	64 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	TRGV10	A0A0A0MS01	117 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	C15orf65	H3BRN8	121 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	NFYA	P23511	347 aa	Predicted RBP	10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	FCGR2C	P31995	323 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	RAB25	P57735	213 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	BPIFB3	P59826	476 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	RPL31	P62899	125 aa	Known RBP	10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	ZNF273	Q14593	569 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	RBMS2	Q15434	407 aa	Known RBP	10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	LTC4S	Q16873	150 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	MIDN	Q504T8	468 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	FAM53A	Q6NSI3	398 aa	Predicted RBP	10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	TRAT1	Q6PIZ9	186 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	BTN2A1	Q7KYR7	527 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	TMEM17	Q86X19	198 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	FAM185A	Q8N0U4	392 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	RFESD	Q8TAC1	157 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	TAF15	Q92804	592 aa	Known RBP eCLIP	10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	ZDHHC16	Q969W1	377 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	FXYD6	Q9H0Q3	95 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	PRDM13	Q9H4Q3	707 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	NCOR1P1	Q9H4R4	102 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	CALY	Q9NYX4	217 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	COPZ2	Q9P299	210 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	CLN8	Q9UBY8	286 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	SLC23A1	Q9UHI7	598 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	NUBP2	Q9Y5Y2	271 aa		10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	SOX21	Q9Y651	276 aa	Predicted RBP	10.35	□□□□□ -0.75
UPF1-208	ENST00000600012	TRBV6-7	A0A0A0MS04	114 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	IGHV3-43	A0A0B4J1X8	118 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	MDFIC2	A0A1B0GVS7	189 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	hADV38S2	A0JD32	116 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	OR5H14	A6NHG9	310 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	HOXA3	O43365	443 aa	Predicted RBP	10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	CRYBA1	P05813	215 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	H2AFB2	P0C5Z0	115 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	IGHV3-43D	P0DP04	118 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	CCL3L1	P16619	93 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	AADAC	P22760	399 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	OMG	P23515	440 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	NPY4R	P50391	375 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	FXYD4	P59646	89 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	GNMT	Q14749	295 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	C17orf58	Q2M2W7	97 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	DEFB112	Q30KQ8	113 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	GPR157	Q5UAW9	335 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	AADACL3	Q5VUY0	350 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	WDR25	Q64LD2	544 aa	Predicted RBP	10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	ZNF660	Q6AZW8	331 aa	Predicted RBP	10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	LHFPL1	Q86WI0	220 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	OR52L2P	Q8NGH6	319 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	OR6F1	Q8NGZ6	308 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	OR4F5	Q8NH21	305 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	MARCH1	Q8TCQ1	289 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	BEX1	Q9HBH7	125 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	VSIG4	Q9Y279	399 aa		10.34	□□□□□ -0.75
UPF1-208	ENST00000600012	TG	P01266	2768 aa		10.34	□□□□□ -0.75

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