RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 SMIM18P0DKX4 95 aa17.72■□□□□ 0.43
UPF1-207ENST00000599848 PCOLCEQ15113 449 aa17.72■□□□□ 0.43
UPF1-207ENST00000599848 APC2O95996 2303 aa17.72■□□□□ 0.43
UPF1-207ENST00000599848 HOXA6P31267 233 aa17.72■□□□□ 0.43
UPF1-207ENST00000599848 PPOXP50336 477 aa17.72■□□□□ 0.43
UPF1-207ENST00000599848 ABHD12Q8N2K0 398 aa17.72■□□□□ 0.43
UPF1-207ENST00000599848 ZNF831Q5JPB2 1677 aa17.72■□□□□ 0.43
UPF1-207ENST00000599848 CD1BP29016 333 aa17.72■□□□□ 0.43
UPF1-207ENST00000599848 TIMP4Q99727 224 aa17.72■□□□□ 0.43
UPF1-207ENST00000599848 FRRS1LQ9P0K9 344 aa17.72■□□□□ 0.43
UPF1-207ENST00000599848 IL17BQ9UHF5 180 aa17.72■□□□□ 0.43
UPF1-207ENST00000599848 HSPB8Q9UJY1 196 aa17.72■□□□□ 0.43
UPF1-207ENST00000599848 A1L4Q6 167 aa17.71■□□□□ 0.43
UPF1-207ENST00000599848 M0R143 59 aa17.71■□□□□ 0.43
UPF1-207ENST00000599848 FAM157CP0CG43 387 aa17.71■□□□□ 0.43
UPF1-207ENST00000599848 NPPCP23582 126 aa17.71■□□□□ 0.43
UPF1-207ENST00000599848 FAM53AQ6NSI3 398 aaPredicted RBP17.71■□□□□ 0.43
UPF1-207ENST00000599848 HOGA1Q86XE5 327 aa17.71■□□□□ 0.43
UPF1-207ENST00000599848 VAX2Q9UIW0 290 aa17.71■□□□□ 0.43
UPF1-207ENST00000599848 HPXP02790 462 aa17.71■□□□□ 0.43
UPF1-207ENST00000599848 GUCD1Q96NT3 240 aa17.71■□□□□ 0.43
UPF1-207ENST00000599848 ASPDHA6ND91 283 aa17.71■□□□□ 0.43
UPF1-207ENST00000599848 HRKO00198 91 aa17.71■□□□□ 0.43
UPF1-207ENST00000599848 SFTA3P0C7M3 94 aa17.71■□□□□ 0.43
UPF1-207ENST00000599848 ERGP11308 486 aa17.71■□□□□ 0.43
UPF1-207ENST00000599848 BSXQ3C1V8 233 aa17.71■□□□□ 0.43
UPF1-207ENST00000599848 MRGPRFQ96AM1 343 aa17.71■□□□□ 0.43
UPF1-207ENST00000599848 LRRC3BQ96PB8 259 aa17.71■□□□□ 0.43
UPF1-207ENST00000599848 ARF6P62330 175 aa17.71■□□□□ 0.43
UPF1-207ENST00000599848 ZNF430Q9H8G1 570 aaPredicted RBP17.71■□□□□ 0.43
UPF1-207ENST00000599848 PRSS50Q9UI38 385 aa17.71■□□□□ 0.43
UPF1-207ENST00000599848 A0A1W2PQM1 296 aa17.7■□□□□ 0.42
UPF1-207ENST00000599848 SOCS1O15524 211 aa17.7■□□□□ 0.42
UPF1-207ENST00000599848 TIAL1Q01085 375 aaKnown RBP eCLIP17.7■□□□□ 0.42
UPF1-207ENST00000599848 LY6EQ16553 131 aa17.7■□□□□ 0.42
UPF1-207ENST00000599848 SLC16A13Q7RTY0 426 aa17.7■□□□□ 0.42
UPF1-207ENST00000599848 ZNF645Q8N7E2 425 aa17.7■□□□□ 0.42
UPF1-207ENST00000599848 ZPLD1Q8TCW7 415 aa17.7■□□□□ 0.42
UPF1-207ENST00000599848 TMEM189A5PLL7 270 aa17.7■□□□□ 0.42
UPF1-207ENST00000599848 RHBDL1O75783 438 aa17.7■□□□□ 0.42
UPF1-207ENST00000599848 SSMEM1Q8WWF3 244 aa17.7■□□□□ 0.42
UPF1-207ENST00000599848 MAP1LC3CQ9BXW4 147 aa17.7■□□□□ 0.42
UPF1-207ENST00000599848 RD3LP0DJH9 198 aa17.7■□□□□ 0.42
UPF1-207ENST00000599848 SLC25A47Q6Q0C1 308 aa17.7■□□□□ 0.42
UPF1-207ENST00000599848 FDCSPQ8NFU4 85 aa17.7■□□□□ 0.42
UPF1-207ENST00000599848 CRYBB2P43320 205 aa17.7■□□□□ 0.42
UPF1-207ENST00000599848 RELL2Q8NC24 303 aaPredicted RBP17.7■□□□□ 0.42
UPF1-207ENST00000599848 LSM10Q969L4 123 aaKnown RBP17.7■□□□□ 0.42
UPF1-207ENST00000599848 ST6GALNAC2Q9UJ37 374 aa17.7■□□□□ 0.42
UPF1-207ENST00000599848 ZNF207O43670 478 aaKnown RBP17.69■□□□□ 0.42
UPF1-207ENST00000599848 OR8D4Q8NGM9 314 aa17.69■□□□□ 0.42
UPF1-207ENST00000599848 ABHD14BQ96IU4 210 aa17.69■□□□□ 0.42
UPF1-207ENST00000599848 FAM74A7A6NL05 159 aa17.69■□□□□ 0.42
UPF1-207ENST00000599848 ICMTO60725 284 aa17.69■□□□□ 0.42
UPF1-207ENST00000599848 INPP5JQ15735 1006 aaPredicted RBP17.69■□□□□ 0.42
UPF1-207ENST00000599848 PPP1R32Q7Z5V6 425 aa17.69■□□□□ 0.42
UPF1-207ENST00000599848 CCL27Q9Y4X3 112 aa17.69■□□□□ 0.42
UPF1-207ENST00000599848 COL18A1P39060 1754 aa17.69■□□□□ 0.42
UPF1-207ENST00000599848 CDCP2Q5VXM1 449 aa17.69■□□□□ 0.42
UPF1-207ENST00000599848 LAMA4Q16363 1823 aa17.69■□□□□ 0.42
UPF1-207ENST00000599848 FABP4P15090 132 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 FSTP19883 344 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 PIGYQ3MUY2 71 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 ABHD17AQ96GS6 310 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 THSD7AQ9UPZ6 1657 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 HMSDA8MTL9 139 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 CSF2RBP32927 897 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 OR4A47Q6IF82 309 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 OR4B1Q8NGF8 309 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 G6PC2Q9NQR9 355 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 OR2H2O95918 312 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 ASAH2BP0C7U1 165 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 ELOBQ15370 118 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 CLEC12BQ2HXU8 276 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 CLEC18BQ6UXF7 455 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 SSBP3Q9BWW4 388 aaPredicted RBP17.68■□□□□ 0.42
UPF1-207ENST00000599848 IGHV3OR16-12A0A075B7B8 117 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 ADAD2Q8NCV1 583 aaKnown RBP17.68■□□□□ 0.42
UPF1-207ENST00000599848 MRPL22Q9NWU5 206 aaKnown RBP17.68■□□□□ 0.42
UPF1-207ENST00000599848 C5orf52A6NGY3 159 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 TMEM33P57088 247 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 KLF14Q8TD94 323 aaPredicted RBP17.68■□□□□ 0.42
UPF1-207ENST00000599848 FOXJ2Q9P0K8 574 aa17.68■□□□□ 0.42
UPF1-207ENST00000599848 A8MWL6 223 aa17.67■□□□□ 0.42
UPF1-207ENST00000599848 GCGP01275 180 aa17.67■□□□□ 0.42
UPF1-207ENST00000599848 ZNF680Q8NEM1 530 aa17.67■□□□□ 0.42
UPF1-207ENST00000599848 H0Y980 276 aa17.67■□□□□ 0.42
UPF1-207ENST00000599848 SRSF10O75494 262 aaKnown RBP17.67■□□□□ 0.42
UPF1-207ENST00000599848 TMEM183BQ1AE95 376 aa17.67■□□□□ 0.42
UPF1-207ENST00000599848 GPR61Q9BZJ8 451 aa17.67■□□□□ 0.42
UPF1-207ENST00000599848 FAM90A26D6RGX4 464 aa17.67■□□□□ 0.42
UPF1-207ENST00000599848 M0R3E3 92 aa17.67■□□□□ 0.42
UPF1-207ENST00000599848 CMC4P56277 68 aaPredicted RBP17.67■□□□□ 0.42
UPF1-207ENST00000599848 PDZD11Q5EBL8 140 aa17.67■□□□□ 0.42
UPF1-207ENST00000599848 ZNF385CQ66K41 422 aaPredicted RBP17.67■□□□□ 0.42
UPF1-207ENST00000599848 LINC01560Q8TB33 94 aa17.67■□□□□ 0.42
UPF1-207ENST00000599848 C19orf24Q9BVV8 132 aa17.67■□□□□ 0.42
UPF1-207ENST00000599848 AKIP1Q9NQ31 210 aa17.67■□□□□ 0.42
UPF1-207ENST00000599848 PRDM6Q9NQX0 595 aa17.67■□□□□ 0.42
UPF1-207ENST00000599848 BRWD1Q9NSI6 2320 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms