RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 PPP1CCP36873 323 aaKnown RBP10.43□□□□□ -0.74
CLK3-224ENST00000568605 SERPINB10P48595 397 aa10.43□□□□□ -0.74
CLK3-224ENST00000568605 LSM3P62310 102 aaKnown RBP10.43□□□□□ -0.74
CLK3-224ENST00000568605 PITPNAQ00169 270 aa10.43□□□□□ -0.74
CLK3-224ENST00000568605 HES1Q14469 280 aa10.43□□□□□ -0.74
CLK3-224ENST00000568605 GNMTQ14749 295 aa10.43□□□□□ -0.74
CLK3-224ENST00000568605 GPR141Q7Z602 305 aa10.43□□□□□ -0.74
CLK3-224ENST00000568605 THNSL2Q86YJ6 484 aa10.43□□□□□ -0.74
CLK3-224ENST00000568605 DRAM1Q8N682 238 aa10.43□□□□□ -0.74
CLK3-224ENST00000568605 OR52L2PQ8NGH6 319 aa10.43□□□□□ -0.74
CLK3-224ENST00000568605 RTN4IP1Q8WWV3 396 aaPredicted RBP10.43□□□□□ -0.74
CLK3-224ENST00000568605 TAF15Q92804 592 aaKnown RBP eCLIP10.43□□□□□ -0.74
CLK3-224ENST00000568605 SLC23A1Q9UHI7 598 aa10.43□□□□□ -0.74
CLK3-224ENST00000568605 MOB4Q9Y3A3 225 aa10.43□□□□□ -0.74
CLK3-224ENST00000568605 DNHD1Q96M86 4753 aa10.42□□□□□ -0.74
CLK3-224ENST00000568605 ANK2Q01484 3957 aa10.42□□□□□ -0.74
CLK3-224ENST00000568605 SLC31A2O15432 143 aa10.42□□□□□ -0.74
CLK3-224ENST00000568605 PEX14O75381 377 aa10.42□□□□□ -0.74
CLK3-224ENST00000568605 DIRAS3O95661 229 aa10.42□□□□□ -0.74
CLK3-224ENST00000568605 SNRNP70P08621 437 aaKnown RBP10.42□□□□□ -0.74
CLK3-224ENST00000568605 TMEM11P17152 192 aa10.42□□□□□ -0.74
CLK3-224ENST00000568605 GNG2P59768 71 aa10.42□□□□□ -0.74
CLK3-224ENST00000568605 FAM71F2Q6NXP2 309 aa10.42□□□□□ -0.74
CLK3-224ENST00000568605 MOB3BQ86TA1 216 aa10.42□□□□□ -0.74
CLK3-224ENST00000568605 IZUMO1Q8IYV9 350 aa10.42□□□□□ -0.74
CLK3-224ENST00000568605 OR4A4PQ8NGN8 299 aa10.42□□□□□ -0.74
CLK3-224ENST00000568605 CYYR1Q96J86 154 aa10.42□□□□□ -0.74
CLK3-224ENST00000568605 RBM14Q96PK6 669 aaKnown RBP10.42□□□□□ -0.74
CLK3-224ENST00000568605 GHITMQ9H3K2 345 aa10.42□□□□□ -0.74
CLK3-224ENST00000568605 PIPOXQ9P0Z9 390 aa10.42□□□□□ -0.74
CLK3-224ENST00000568605 SPATA2Q9UM82 520 aa10.42□□□□□ -0.74
CLK3-224ENST00000568605 TRDCB7Z8K6 153 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 ITGB1BP1O14713 200 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 FABP7O15540 132 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 LANCL1O43813 399 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 GABARAPO95166 117 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 IGKV1D-33P01593 117 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 IGKV1-33P01594 117 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 DTYMKP23919 212 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 CD24P25063 80 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 REG1BP48304 166 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 PROK1P58294 105 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 HABP2Q14520 560 aaPredicted RBP10.41□□□□□ -0.74
CLK3-224ENST00000568605 SRSF7Q16629 238 aaKnown RBP eCLIP10.41□□□□□ -0.74
CLK3-224ENST00000568605 PNLIPRP3Q17RR3 467 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 CT45A1Q5HYN5 189 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 UBE2NLQ5JXB2 153 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 CCBE1Q6UXH8 406 aaPredicted RBP10.41□□□□□ -0.74
CLK3-224ENST00000568605 Q6ZPA2 131 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 CT45A3Q8NHU0 189 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 CFHR4Q92496 578 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 ST6GALNAC6Q969X2 333 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 SLC25A46Q96AG3 418 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 KCTD12Q96CX2 325 aaKnown RBP10.41□□□□□ -0.74
CLK3-224ENST00000568605 S1PR3Q99500 378 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 DIABLOQ9NR28 239 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 KCNK7Q9Y2U2 307 aa10.41□□□□□ -0.74
CLK3-224ENST00000568605 SAA2-SAA4A0A096LPE2 208 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 TMEM235A6NFC5 223 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 FAM90A9PA6NNJ1 464 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 RAB29O14966 203 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 SAA2P0DJI9 122 aaPredicted RBP10.4□□□□□ -0.74
CLK3-224ENST00000568605 TGFBR1P36897 503 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 RPS19P39019 145 aaKnown RBP10.4□□□□□ -0.74
CLK3-224ENST00000568605 VDAC2P45880 294 aaPredicted RBP10.4□□□□□ -0.74
CLK3-224ENST00000568605 ZNF134P52741 427 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 NCS1P62166 190 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 DIAPH2-AS1Q14236 149 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 CDNFQ49AH0 187 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 HACD4Q5VWC8 232 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 Q6ZS49 121 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 ANKRD13BQ86YJ7 626 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 OR5H6Q8NGV6 325 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 OR2T10Q8NGZ9 312 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 OR10J5Q8NHC4 309 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 SGMS2Q8NHU3 365 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 SLC25A38Q96DW6 304 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 CABLES2Q9BTV7 478 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 ZNF702PQ9H963 129 aa10.4□□□□□ -0.74
CLK3-224ENST00000568605 ST8SIA5O15466 376 aa10.39□□□□□ -0.75
CLK3-224ENST00000568605 FGF16O43320 207 aa10.39□□□□□ -0.75
CLK3-224ENST00000568605 NOL3O60936 208 aaKnown RBP10.39□□□□□ -0.75
CLK3-224ENST00000568605 SCTP09683 121 aa10.39□□□□□ -0.75
CLK3-224ENST00000568605 CD1BP29016 333 aa10.39□□□□□ -0.75
CLK3-224ENST00000568605 CEACAM6P40199 344 aa10.39□□□□□ -0.75
CLK3-224ENST00000568605 VBP1P61758 197 aa10.39□□□□□ -0.75
CLK3-224ENST00000568605 FAM53AQ6NSI3 398 aaPredicted RBP10.39□□□□□ -0.75
CLK3-224ENST00000568605 ZNF833PQ6ZTB9 187 aa10.39□□□□□ -0.75
CLK3-224ENST00000568605 Q8N2B8 174 aa10.39□□□□□ -0.75
CLK3-224ENST00000568605 ACOT12Q8WYK0 555 aa10.39□□□□□ -0.75
CLK3-224ENST00000568605 AP3S1Q92572 193 aa10.39□□□□□ -0.75
CLK3-224ENST00000568605 S100A16Q96FQ6 103 aaKnown RBP10.39□□□□□ -0.75
CLK3-224ENST00000568605 GINS4Q9BRT9 223 aa10.39□□□□□ -0.75
CLK3-224ENST00000568605 DCSTAMPQ9H295 470 aa10.39□□□□□ -0.75
CLK3-224ENST00000568605 IFI27L2Q9H2X8 130 aa10.39□□□□□ -0.75
CLK3-224ENST00000568605 OR1A1Q9P1Q5 309 aa10.39□□□□□ -0.75
CLK3-224ENST00000568605 BET1O15155 118 aa10.38□□□□□ -0.75
CLK3-224ENST00000568605 MOSP00540 346 aa10.38□□□□□ -0.75
CLK3-224ENST00000568605 ALDH3B2P48448 385 aa10.38□□□□□ -0.75
CLK3-224ENST00000568605 LSAMPQ13449 338 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms