RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 C12orf73Q69YU5 71 aa12.2□□□□□ -0.46
CLK3-223ENST00000568488 ODF3L1Q8IXM7 274 aa12.2□□□□□ -0.46
CLK3-223ENST00000568488 OR52L2PQ8NGH6 319 aa12.2□□□□□ -0.46
CLK3-223ENST00000568488 CCDC124Q96CT7 223 aaKnown RBP12.2□□□□□ -0.46
CLK3-223ENST00000568488 PEF1Q9UBV8 284 aaKnown RBP12.2□□□□□ -0.46
CLK3-223ENST00000568488 OR4C45A6NMZ5 311 aa12.19□□□□□ -0.46
CLK3-223ENST00000568488 ZNF785A8K8V0 405 aa12.19□□□□□ -0.46
CLK3-223ENST00000568488 B2RBV5 119 aa12.19□□□□□ -0.46
CLK3-223ENST00000568488 RAB3AP20336 220 aa12.19□□□□□ -0.46
CLK3-223ENST00000568488 MECP2P51608 486 aaKnown RBP12.19□□□□□ -0.46
CLK3-223ENST00000568488 GNMTQ14749 295 aa12.19□□□□□ -0.46
CLK3-223ENST00000568488 FDX2Q6P4F2 183 aa12.19□□□□□ -0.46
CLK3-223ENST00000568488 FAM131AQ6UXB0 335 aa12.19□□□□□ -0.46
CLK3-223ENST00000568488 KCTD20Q7Z5Y7 419 aa12.19□□□□□ -0.46
CLK3-223ENST00000568488 LAX1Q8IWV1 398 aa12.19□□□□□ -0.46
CLK3-223ENST00000568488 ARHGAP24Q8N264 748 aa12.19□□□□□ -0.46
CLK3-223ENST00000568488 POC5Q8NA72 575 aa12.19□□□□□ -0.46
CLK3-223ENST00000568488 METTL9Q9H1A3 318 aa12.19□□□□□ -0.46
CLK3-223ENST00000568488 PEMTQ9UBM1 199 aa12.19□□□□□ -0.46
CLK3-223ENST00000568488 ZAR1LA6NP61 321 aa12.18□□□□□ -0.46
CLK3-223ENST00000568488 J3QLW9 94 aa12.18□□□□□ -0.46
CLK3-223ENST00000568488 CA2P00918 260 aa12.18□□□□□ -0.46
CLK3-223ENST00000568488 TRBV12-3P01733 135 aa12.18□□□□□ -0.46
CLK3-223ENST00000568488 ZNF19P17023 458 aa12.18□□□□□ -0.46
CLK3-223ENST00000568488 SERPINA2P20848 420 aa12.18□□□□□ -0.46
CLK3-223ENST00000568488 PPP1CCP36873 323 aaKnown RBP12.18□□□□□ -0.46
CLK3-223ENST00000568488 DEFA5Q01523 94 aa12.18□□□□□ -0.46
CLK3-223ENST00000568488 ALKBH1Q13686 389 aaKnown RBP12.18□□□□□ -0.46
CLK3-223ENST00000568488 ZNF562Q6V9R5 426 aa12.18□□□□□ -0.46
CLK3-223ENST00000568488 ASCL4Q6XD76 172 aa12.18□□□□□ -0.46
CLK3-223ENST00000568488 ZNF833PQ6ZTB9 187 aa12.18□□□□□ -0.46
CLK3-223ENST00000568488 OR51A2Q8NGJ7 313 aa12.18□□□□□ -0.46
CLK3-223ENST00000568488 GRPEL2Q8TAA5 225 aa12.18□□□□□ -0.46
CLK3-223ENST00000568488 DYNLRB2Q8TF09 96 aa12.18□□□□□ -0.46
CLK3-223ENST00000568488 TSEN15Q8WW01 171 aaKnown RBP12.18□□□□□ -0.46
CLK3-223ENST00000568488 S100A13Q99584 98 aa12.18□□□□□ -0.46
CLK3-223ENST00000568488 ARGLU1Q9NWB6 273 aaPredicted RBP12.18□□□□□ -0.46
CLK3-223ENST00000568488 SAA2-SAA4A0A096LPE2 208 aa12.17□□□□□ -0.46
CLK3-223ENST00000568488 DAPL1A0PJW8 107 aa12.17□□□□□ -0.46
CLK3-223ENST00000568488 MCRIP1C9JLW8 97 aa12.17□□□□□ -0.46
CLK3-223ENST00000568488 H7C2Y5 167 aa12.17□□□□□ -0.46
CLK3-223ENST00000568488 SLC16A6O15403 523 aa12.17□□□□□ -0.46
CLK3-223ENST00000568488 FADS2O95864 444 aaKnown RBP12.17□□□□□ -0.46
CLK3-223ENST00000568488 SAA2P0DJI9 122 aaPredicted RBP12.17□□□□□ -0.46
CLK3-223ENST00000568488 RCC1P18754 421 aaPredicted RBP12.17□□□□□ -0.46
CLK3-223ENST00000568488 MPV17LQ2QL34 196 aa12.17□□□□□ -0.46
CLK3-223ENST00000568488 NHLRC3Q5JS37 347 aa12.17□□□□□ -0.46
CLK3-223ENST00000568488 C5orf24Q7Z6I8 188 aa12.17□□□□□ -0.46
CLK3-223ENST00000568488 LINC00596Q86U02 117 aa12.17□□□□□ -0.46
CLK3-223ENST00000568488 PARP16Q8N5Y8 322 aa12.17□□□□□ -0.46
CLK3-223ENST00000568488 ASB9Q96DX5 294 aa12.17□□□□□ -0.46
CLK3-223ENST00000568488 GGTLC1Q9BX51 225 aa12.17□□□□□ -0.46
CLK3-223ENST00000568488 TAF9BQ9HBM6 251 aa12.17□□□□□ -0.46
CLK3-223ENST00000568488 METTL1Q9UBP6 276 aaKnown RBP12.17□□□□□ -0.46
CLK3-223ENST00000568488 DNAH6Q9C0G6 4158 aa12.17□□□□□ -0.46
CLK3-223ENST00000568488 OR2A4O95047 310 aa12.16□□□□□ -0.46
CLK3-223ENST00000568488 NDUFB8O95169 186 aa12.16□□□□□ -0.46
CLK3-223ENST00000568488 ALDH3A2P51648 485 aa12.16□□□□□ -0.46
CLK3-223ENST00000568488 GLDNQ6ZMI3 551 aaPredicted RBP12.16□□□□□ -0.46
CLK3-223ENST00000568488 LYG2Q86SG7 212 aa12.16□□□□□ -0.46
CLK3-223ENST00000568488 BVESQ8NE79 360 aa12.16□□□□□ -0.46
CLK3-223ENST00000568488 NRBF2Q96F24 287 aa12.16□□□□□ -0.46
CLK3-223ENST00000568488 DYNC1H1Q14204 4646 aaKnown RBP12.16□□□□□ -0.46
CLK3-223ENST00000568488 LOC102724200A0A096LPH7 203 aaPredicted RBP12.15□□□□□ -0.46
CLK3-223ENST00000568488 A0A1W2PP11 408 aa12.15□□□□□ -0.46
CLK3-223ENST00000568488 H3BUA1 57 aa12.15□□□□□ -0.46
CLK3-223ENST00000568488 AIREO43918 545 aa12.15□□□□□ -0.46
CLK3-223ENST00000568488 SNX3O60493 162 aa12.15□□□□□ -0.46
CLK3-223ENST00000568488 MED14OSP0DP75 135 aa12.15□□□□□ -0.46
CLK3-223ENST00000568488 AADACP22760 399 aa12.15□□□□□ -0.46
CLK3-223ENST00000568488 TNFRSF9Q07011 255 aa12.15□□□□□ -0.46
CLK3-223ENST00000568488 FXYD3Q14802 87 aa12.15□□□□□ -0.46
CLK3-223ENST00000568488 TRAT1Q6PIZ9 186 aa12.15□□□□□ -0.46
CLK3-223ENST00000568488 PHLDA1Q8WV24 401 aaPredicted RBP12.15□□□□□ -0.46
CLK3-223ENST00000568488 RFKQ969G6 155 aa12.15□□□□□ -0.46
CLK3-223ENST00000568488 PELI1Q96FA3 418 aa12.15□□□□□ -0.46
CLK3-223ENST00000568488 C4orf36Q96KX1 117 aa12.15□□□□□ -0.46
CLK3-223ENST00000568488 PARP12Q9H0J9 701 aaKnown RBP12.15□□□□□ -0.46
CLK3-223ENST00000568488 TAS2R4Q9NYW5 299 aa12.15□□□□□ -0.46
CLK3-223ENST00000568488 KCNIP1Q9NZI2 227 aa12.15□□□□□ -0.46
CLK3-223ENST00000568488 RCC2Q9P258 522 aaKnown RBP12.15□□□□□ -0.46
CLK3-223ENST00000568488 ENOPH1Q9UHY7 261 aa12.15□□□□□ -0.46
CLK3-223ENST00000568488 A0A0B4J203 849 aa12.14□□□□□ -0.47
CLK3-223ENST00000568488 AQP12BA6NM10 295 aa12.14□□□□□ -0.47
CLK3-223ENST00000568488 SLC22A1O15245 554 aa12.14□□□□□ -0.47
CLK3-223ENST00000568488 FKBP6O75344 327 aa12.14□□□□□ -0.47
CLK3-223ENST00000568488 SOX2P48431 317 aa12.14□□□□□ -0.47
CLK3-223ENST00000568488 TMED1Q13445 227 aa12.14□□□□□ -0.47
CLK3-223ENST00000568488 PSG5Q15238 335 aa12.14□□□□□ -0.47
CLK3-223ENST00000568488 DEFB114Q30KQ6 69 aa12.14□□□□□ -0.47
CLK3-223ENST00000568488 SLC22A6Q4U2R8 563 aa12.14□□□□□ -0.47
CLK3-223ENST00000568488 ZNF343Q6P1L6 599 aa12.14□□□□□ -0.47
CLK3-223ENST00000568488 SPATA24Q86W54 205 aa12.14□□□□□ -0.47
CLK3-223ENST00000568488 AQP12AQ8IXF9 295 aa12.14□□□□□ -0.47
CLK3-223ENST00000568488 OR2AK2Q8NG84 335 aa12.14□□□□□ -0.47
CLK3-223ENST00000568488 SNAPC3Q92966 411 aa12.14□□□□□ -0.47
CLK3-223ENST00000568488 WDR89Q96FK6 387 aaPredicted RBP12.14□□□□□ -0.47
CLK3-223ENST00000568488 PAK1IP1Q9NWT1 392 aaPredicted RBP12.14□□□□□ -0.47
CLK3-223ENST00000568488 IL36GQ9NZH8 169 aa12.14□□□□□ -0.47
CLK3-223ENST00000568488 JPT1Q9UK76 154 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms