RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 SRSF7Q16629 238 aaKnown RBP eCLIP13.55□□□□□ -0.24
CLK3-221ENST00000568139 LY6G6FQ5SQ64 297 aa13.55□□□□□ -0.24
CLK3-221ENST00000568139 ZNF660Q6AZW8 331 aaPredicted RBP13.55□□□□□ -0.24
CLK3-221ENST00000568139 ZNF833PQ6ZTB9 187 aa13.55□□□□□ -0.24
CLK3-221ENST00000568139 ZNF554Q86TJ5 538 aa13.55□□□□□ -0.24
CLK3-221ENST00000568139 Q8N1Y9 231 aa13.55□□□□□ -0.24
CLK3-221ENST00000568139 OR52L2PQ8NGH6 319 aa13.55□□□□□ -0.24
CLK3-221ENST00000568139 PYDC1Q8WXC3 89 aa13.55□□□□□ -0.24
CLK3-221ENST00000568139 FGF20Q9NP95 211 aaPredicted RBP13.55□□□□□ -0.24
CLK3-221ENST00000568139 C19orf73Q9NVV2 129 aa13.55□□□□□ -0.24
CLK3-221ENST00000568139 KIAA1456Q9P272 454 aa13.55□□□□□ -0.24
CLK3-221ENST00000568139 JPT1Q9UK76 154 aa13.55□□□□□ -0.24
CLK3-221ENST00000568139 FOXA2Q9Y261 457 aaPredicted RBP13.55□□□□□ -0.24
CLK3-221ENST00000568139 NUBP2Q9Y5Y2 271 aa13.55□□□□□ -0.24
CLK3-221ENST00000568139 PEX16Q9Y5Y5 336 aa13.55□□□□□ -0.24
CLK3-221ENST00000568139 STARD9Q9P2P6 4700 aa13.54□□□□□ -0.24
CLK3-221ENST00000568139 TRBV5-5A0A0J9YX44 114 aa13.54□□□□□ -0.24
CLK3-221ENST00000568139 FAM90A7PA6NKC0 464 aa13.54□□□□□ -0.24
CLK3-221ENST00000568139 FAM90A23PA8MXZ1 464 aa13.54□□□□□ -0.24
CLK3-221ENST00000568139 OGG1O15527 345 aa13.54□□□□□ -0.24
CLK3-221ENST00000568139 YPEL1O60688 119 aa13.54□□□□□ -0.24
CLK3-221ENST00000568139 GLAP06280 429 aa13.54□□□□□ -0.24
CLK3-221ENST00000568139 EGR2P11161 476 aaPredicted RBP13.54□□□□□ -0.24
CLK3-221ENST00000568139 VEGFCP49767 419 aa13.54□□□□□ -0.24
CLK3-221ENST00000568139 HTD2P86397 168 aa13.54□□□□□ -0.24
CLK3-221ENST00000568139 ECSCRQ19T08 205 aa13.54□□□□□ -0.24
CLK3-221ENST00000568139 LYPD6Q86Y78 171 aa13.54□□□□□ -0.24
CLK3-221ENST00000568139 TCTEX1D1Q8N7M0 179 aa13.54□□□□□ -0.24
CLK3-221ENST00000568139 ISOC1Q96CN7 298 aa13.54□□□□□ -0.24
CLK3-221ENST00000568139 YPEL2Q96QA6 119 aa13.54□□□□□ -0.24
CLK3-221ENST00000568139 OR4C12Q96R67 309 aa13.54□□□□□ -0.24
CLK3-221ENST00000568139 HSPB1P04792 205 aaKnown RBP13.53□□□□□ -0.24
CLK3-221ENST00000568139 FUT3P21217 361 aa13.53□□□□□ -0.24
CLK3-221ENST00000568139 PPP1CCP36873 323 aaKnown RBP13.53□□□□□ -0.24
CLK3-221ENST00000568139 CX3CL1P78423 397 aa13.53□□□□□ -0.24
CLK3-221ENST00000568139 PITPNAQ00169 270 aa13.53□□□□□ -0.24
CLK3-221ENST00000568139 OR2G6Q5TZ20 316 aa13.53□□□□□ -0.24
CLK3-221ENST00000568139 SIGIRRQ6IA17 410 aa13.53□□□□□ -0.24
CLK3-221ENST00000568139 GLIPR1L1Q6UWM5 242 aa13.53□□□□□ -0.24
CLK3-221ENST00000568139 C5orf24Q7Z6I8 188 aa13.53□□□□□ -0.24
CLK3-221ENST00000568139 CBR4Q8N4T8 237 aa13.53□□□□□ -0.24
CLK3-221ENST00000568139 OR13C5Q8NGS8 318 aa13.53□□□□□ -0.24
CLK3-221ENST00000568139 CASTOR1Q8WTX7 329 aa13.53□□□□□ -0.24
CLK3-221ENST00000568139 APH1BQ8WW43 257 aa13.53□□□□□ -0.24
CLK3-221ENST00000568139 MUL1Q969V5 352 aa13.53□□□□□ -0.24
CLK3-221ENST00000568139 FLYWCH2Q96CP2 140 aaKnown RBP13.53□□□□□ -0.24
CLK3-221ENST00000568139 SMIM19Q96E16 107 aa13.53□□□□□ -0.24
CLK3-221ENST00000568139 KCNIP1Q9NZI2 227 aa13.53□□□□□ -0.24
CLK3-221ENST00000568139 TNCP24821 2201 aa13.53□□□□□ -0.24
CLK3-221ENST00000568139 TRAV8-7A0A075B6U6 113 aa13.52□□□□□ -0.25
CLK3-221ENST00000568139 ARPC1BO15143 372 aaKnown RBP13.52□□□□□ -0.25
CLK3-221ENST00000568139 HSPA12AO43301 675 aa13.52□□□□□ -0.25
CLK3-221ENST00000568139 ATP5HO75947 161 aa13.52□□□□□ -0.25
CLK3-221ENST00000568139 OR3A3P47888 321 aa13.52□□□□□ -0.25
CLK3-221ENST00000568139 ETV1P50549 477 aa13.52□□□□□ -0.25
CLK3-221ENST00000568139 PYHIN1Q6K0P9 492 aa13.52□□□□□ -0.25
CLK3-221ENST00000568139 CD200R1LQ6Q8B3 271 aa13.52□□□□□ -0.25
CLK3-221ENST00000568139 MRPL30Q8TCC3 161 aaKnown RBP13.52□□□□□ -0.25
CLK3-221ENST00000568139 CYYR1Q96J86 154 aa13.52□□□□□ -0.25
CLK3-221ENST00000568139 RHOVQ96L33 236 aa13.52□□□□□ -0.25
CLK3-221ENST00000568139 RDH12Q96NR8 316 aa13.52□□□□□ -0.25
CLK3-221ENST00000568139 BANF2Q9H503 90 aa13.52□□□□□ -0.25
CLK3-221ENST00000568139 SAA2-SAA4A0A096LPE2 208 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 UBE2QL1A1L167 161 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 H3BNX3 289 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 RRHO14718 337 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 CIB2O75838 187 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 RGS11O94810 467 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 IGLV1-51P01701 117 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 MAS1P04201 325 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 SAA2P0DJI9 122 aaPredicted RBP13.51□□□□□ -0.25
CLK3-221ENST00000568139 FSTP19883 344 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 RPS11P62280 158 aaKnown RBP eCLIP13.51□□□□□ -0.25
CLK3-221ENST00000568139 TMEM267Q0VDI3 215 aaPredicted RBP13.51□□□□□ -0.25
CLK3-221ENST00000568139 LRRC36Q1X8D7 754 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 FAM71F2Q6NXP2 309 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 ADAMTSL5Q6ZMM2 481 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 TMPRSS11AQ6ZMR5 421 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 CDH26Q8IXH8 852 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 GHSRQ92847 366 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 Q96M66 194 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 ELOVL1Q9BW60 279 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 SELENOIQ9C0D9 397 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 FBXL15Q9H469 300 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 BABAM2Q9NXR7 383 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 CKLFQ9UBR5 152 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 STUB1Q9UNE7 303 aa13.51□□□□□ -0.25
CLK3-221ENST00000568139 LOC100130705A0A1B0GUX0 176 aa13.5□□□□□ -0.25
CLK3-221ENST00000568139 FCN1O00602 326 aa13.5□□□□□ -0.25
CLK3-221ENST00000568139 LALBAP00709 142 aa13.5□□□□□ -0.25
CLK3-221ENST00000568139 IGHV3-11P01762 117 aa13.5□□□□□ -0.25
CLK3-221ENST00000568139 MGMTP16455 207 aa13.5□□□□□ -0.25
CLK3-221ENST00000568139 DCKP27707 260 aa13.5□□□□□ -0.25
CLK3-221ENST00000568139 Q499Y3 187 aa13.5□□□□□ -0.25
CLK3-221ENST00000568139 AKIRIN2Q53H80 203 aa13.5□□□□□ -0.25
CLK3-221ENST00000568139 C6orf141Q5SZD1 244 aa13.5□□□□□ -0.25
CLK3-221ENST00000568139 DMKNQ6E0U4 476 aaPredicted RBP13.5□□□□□ -0.25
CLK3-221ENST00000568139 AWAT2Q6E213 333 aa13.5□□□□□ -0.25
CLK3-221ENST00000568139 HAPLN4Q86UW8 402 aa13.5□□□□□ -0.25
CLK3-221ENST00000568139 SGPP2Q8IWX5 399 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms