RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SMIM31A0A1B0GVY4 71 aa13.91□□□□□ -0.18
CLN3-217ENST00000565354 FAM25AB3EWG3 89 aa13.91□□□□□ -0.18
CLN3-217ENST00000565354 FAM25CB3EWG5 89 aa13.91□□□□□ -0.18
CLN3-217ENST00000565354 FAM25GB3EWG6 89 aa13.91□□□□□ -0.18
CLN3-217ENST00000565354 LPLP06858 475 aa13.91□□□□□ -0.18
CLN3-217ENST00000565354 BRS3P32247 399 aa13.91□□□□□ -0.18
CLN3-217ENST00000565354 PPP1CCP36873 323 aaKnown RBP13.91□□□□□ -0.18
CLN3-217ENST00000565354 GNMTQ14749 295 aa13.91□□□□□ -0.18
CLN3-217ENST00000565354 LY6EQ16553 131 aa13.91□□□□□ -0.18
CLN3-217ENST00000565354 AANATQ16613 207 aa13.91□□□□□ -0.18
CLN3-217ENST00000565354 MORN2Q502X0 79 aa13.91□□□□□ -0.18
CLN3-217ENST00000565354 TMEM69Q5SWH9 247 aa13.91□□□□□ -0.18
CLN3-217ENST00000565354 LDLRAD2Q5SZI1 272 aa13.91□□□□□ -0.18
CLN3-217ENST00000565354 FAM53AQ6NSI3 398 aaPredicted RBP13.91□□□□□ -0.18
CLN3-217ENST00000565354 Q6ZPA2 131 aa13.91□□□□□ -0.18
CLN3-217ENST00000565354 NUDCD2Q8WVJ2 157 aa13.91□□□□□ -0.18
CLN3-217ENST00000565354 MAFIPQ8WZ33 124 aa13.91□□□□□ -0.18
CLN3-217ENST00000565354 OCSTAMPQ9BR26 566 aa13.91□□□□□ -0.18
CLN3-217ENST00000565354 ZNF230Q9UIE0 474 aaPredicted RBP13.91□□□□□ -0.18
CLN3-217ENST00000565354 VPREB3Q9UKI3 123 aa13.91□□□□□ -0.18
CLN3-217ENST00000565354 ELF5Q9UKW6 265 aaPredicted RBP13.91□□□□□ -0.18
CLN3-217ENST00000565354 OOSP1A8MZH6 123 aa13.9□□□□□ -0.18
CLN3-217ENST00000565354 FABP7O15540 132 aa13.9□□□□□ -0.18
CLN3-217ENST00000565354 XRCC3O43542 346 aa13.9□□□□□ -0.18
CLN3-217ENST00000565354 YPEL1O60688 119 aa13.9□□□□□ -0.18
CLN3-217ENST00000565354 SCTP09683 121 aa13.9□□□□□ -0.18
CLN3-217ENST00000565354 DTYMKP23919 212 aa13.9□□□□□ -0.18
CLN3-217ENST00000565354 ZBTB25P24278 435 aa13.9□□□□□ -0.18
CLN3-217ENST00000565354 LINC00311Q8N616 119 aa13.9□□□□□ -0.18
CLN3-217ENST00000565354 C8orf31Q8N9H6 132 aa13.9□□□□□ -0.18
CLN3-217ENST00000565354 DTX3Q8N9I9 347 aa13.9□□□□□ -0.18
CLN3-217ENST00000565354 OR2AK2Q8NG84 335 aa13.9□□□□□ -0.18
CLN3-217ENST00000565354 OR4A4PQ8NGN8 299 aa13.9□□□□□ -0.18
CLN3-217ENST00000565354 CMTM3Q96MX0 182 aa13.9□□□□□ -0.18
CLN3-217ENST00000565354 YPEL2Q96QA6 119 aa13.9□□□□□ -0.18
CLN3-217ENST00000565354 ABHD14AQ9BUJ0 271 aa13.9□□□□□ -0.18
CLN3-217ENST00000565354 ST6GALNAC5Q9BVH7 336 aa13.9□□□□□ -0.18
CLN3-217ENST00000565354 H3BMQ9 156 aa13.89□□□□□ -0.19
CLN3-217ENST00000565354 SLC31A2O15432 143 aa13.89□□□□□ -0.19
CLN3-217ENST00000565354 GPR137BO60478 399 aa13.89□□□□□ -0.19
CLN3-217ENST00000565354 HPGDSO60760 199 aa13.89□□□□□ -0.19
CLN3-217ENST00000565354 APOA1P02647 267 aa13.89□□□□□ -0.19
CLN3-217ENST00000565354 EIF4EP06730 217 aaKnown RBP13.89□□□□□ -0.19
CLN3-217ENST00000565354 RAB7AP51149 207 aa13.89□□□□□ -0.19
CLN3-217ENST00000565354 SLC25A48Q6ZT89 311 aaKnown RBP13.89□□□□□ -0.19
CLN3-217ENST00000565354 LYG1Q8N1E2 194 aa13.89□□□□□ -0.19
CLN3-217ENST00000565354 AUNIPQ9H7T9 357 aa13.89□□□□□ -0.19
CLN3-217ENST00000565354 PITPNC1Q9UKF7 332 aa13.89□□□□□ -0.19
CLN3-217ENST00000565354 CEPT1Q9Y6K0 416 aa13.89□□□□□ -0.19
CLN3-217ENST00000565354 NBEAL2Q6ZNJ1 2754 aa13.89□□□□□ -0.19
CLN3-217ENST00000565354 A0A1B0GUS0 222 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 FAM181BA6NEQ2 426 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 VGLL3A8MV65 326 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 HSD17B6O14756 317 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 BET1O15155 118 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 RGS5O15539 181 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 GAPDHP04406 335 aaKnown RBP13.88□□□□□ -0.19
CLN3-217ENST00000565354 GSTT2P0CG29 244 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 GSTT2BP0CG30 244 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 CEACAM6P40199 344 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 RAB13P51153 203 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 TAS2R20P59543 309 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 SRSF4Q08170 494 aaKnown RBP13.88□□□□□ -0.19
CLN3-217ENST00000565354 SRSF7Q16629 238 aaKnown RBP eCLIP13.88□□□□□ -0.19
CLN3-217ENST00000565354 CT45A1Q5HYN5 189 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 DHRS7BQ6IAN0 325 aaPredicted RBP13.88□□□□□ -0.19
CLN3-217ENST00000565354 ZNF439Q8NDP4 499 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 CT45A3Q8NHU0 189 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 WFDC12Q8WWY7 111 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 EDARADDQ8WWZ3 215 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 GINS4Q9BRT9 223 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 MMP27Q9H306 513 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 RAB18Q9NP72 206 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 CCDC59Q9P031 241 aaKnown RBP13.88□□□□□ -0.19
CLN3-217ENST00000565354 OR1A1Q9P1Q5 309 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 RSL24D1Q9UHA3 163 aaKnown RBP13.88□□□□□ -0.19
CLN3-217ENST00000565354 ADAM30Q9UKF2 790 aa13.88□□□□□ -0.19
CLN3-217ENST00000565354 MRPS7Q9Y2R9 242 aaKnown RBP13.88□□□□□ -0.19
CLN3-217ENST00000565354 LY6LH3BQJ8 138 aa13.87□□□□□ -0.19
CLN3-217ENST00000565354 REG1BP48304 166 aa13.87□□□□□ -0.19
CLN3-217ENST00000565354 DYNLT3P51808 116 aa13.87□□□□□ -0.19
CLN3-217ENST00000565354 LY6G6FQ5SQ64 297 aa13.87□□□□□ -0.19
CLN3-217ENST00000565354 HIST2H2BDQ6DRA6 164 aa13.87□□□□□ -0.19
CLN3-217ENST00000565354 LIAT1Q6ZQX7 453 aa13.87□□□□□ -0.19
CLN3-217ENST00000565354 MOB3BQ86TA1 216 aa13.87□□□□□ -0.19
CLN3-217ENST00000565354 OR8H3Q8N146 312 aa13.87□□□□□ -0.19
CLN3-217ENST00000565354 OR10J5Q8NHC4 309 aa13.87□□□□□ -0.19
CLN3-217ENST00000565354 CAPSLQ8WWF8 208 aa13.87□□□□□ -0.19
CLN3-217ENST00000565354 IFT46Q9NQC8 304 aa13.87□□□□□ -0.19
CLN3-217ENST00000565354 TCF19Q9Y242 345 aa13.87□□□□□ -0.19
CLN3-217ENST00000565354 ST8SIA5O15466 376 aa13.86□□□□□ -0.19
CLN3-217ENST00000565354 TXNL1O43396 289 aa13.86□□□□□ -0.19
CLN3-217ENST00000565354 ELK1P19419 428 aa13.86□□□□□ -0.19
CLN3-217ENST00000565354 CBX5P45973 191 aa13.86□□□□□ -0.19
CLN3-217ENST00000565354 ZNF134P52741 427 aa13.86□□□□□ -0.19
CLN3-217ENST00000565354 ARPC4P59998 168 aa13.86□□□□□ -0.19
CLN3-217ENST00000565354 RPL15P61313 204 aaKnown RBP13.86□□□□□ -0.19
CLN3-217ENST00000565354 Q6ZS49 121 aa13.86□□□□□ -0.19
CLN3-217ENST00000565354 TGIF2LXQ8IUE1 241 aa13.86□□□□□ -0.19
CLN3-217ENST00000565354 DYNC2LI1Q8TCX1 351 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms