RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 RFX2P48378 723 aa16.82■□□□□ 0.28
CLN3-212ENST00000564574 DLX1P56177 255 aa16.82■□□□□ 0.28
CLN3-212ENST00000564574 BPIFB3P59826 476 aa16.82■□□□□ 0.28
CLN3-212ENST00000564574 KLRD1Q13241 179 aa16.82■□□□□ 0.28
CLN3-212ENST00000564574 ZNF626Q68DY1 528 aa16.82■□□□□ 0.28
CLN3-212ENST00000564574 ZNF57Q68EA5 555 aaPredicted RBP16.82■□□□□ 0.28
CLN3-212ENST00000564574 C1orf229Q6ZS94 237 aaPredicted RBP16.82■□□□□ 0.28
CLN3-212ENST00000564574 ARRDC1Q8N5I2 433 aa16.82■□□□□ 0.28
CLN3-212ENST00000564574 ZNF439Q8NDP4 499 aa16.82■□□□□ 0.28
CLN3-212ENST00000564574 OR2AK2Q8NG84 335 aa16.82■□□□□ 0.28
CLN3-212ENST00000564574 NANPQ8TBE9 248 aa16.82■□□□□ 0.28
CLN3-212ENST00000564574 GIMAP1Q8WWP7 306 aa16.82■□□□□ 0.28
CLN3-212ENST00000564574 ACANP16112 2415 aa16.81■□□□□ 0.28
CLN3-212ENST00000564574 TRAV40A0A0B4J280 105 aa16.81■□□□□ 0.28
CLN3-212ENST00000564574 ODF3BA8MYP8 253 aa16.81■□□□□ 0.28
CLN3-212ENST00000564574 TUSC2O75896 110 aa16.81■□□□□ 0.28
CLN3-212ENST00000564574 FSHBP01225 129 aa16.81■□□□□ 0.28
CLN3-212ENST00000564574 IFNA6P05013 189 aa16.81■□□□□ 0.28
CLN3-212ENST00000564574 HNF1AP20823 631 aa16.81■□□□□ 0.28
CLN3-212ENST00000564574 RAB7AP51149 207 aa16.81■□□□□ 0.28
CLN3-212ENST00000564574 DHRS11Q6UWP2 260 aa16.81■□□□□ 0.28
CLN3-212ENST00000564574 SLC25A48Q6ZT89 311 aaKnown RBP16.81■□□□□ 0.28
CLN3-212ENST00000564574 TMEM17Q86X19 198 aa16.81■□□□□ 0.28
CLN3-212ENST00000564574 LEAP2Q969E1 77 aa16.81■□□□□ 0.28
CLN3-212ENST00000564574 SMR3AQ99954 134 aa16.81■□□□□ 0.28
CLN3-212ENST00000564574 ABHD14AQ9BUJ0 271 aa16.81■□□□□ 0.28
CLN3-212ENST00000564574 TINAGL1Q9GZM7 467 aaPredicted RBP16.81■□□□□ 0.28
CLN3-212ENST00000564574 C2CD3Q4AC94 2353 aa16.81■□□□□ 0.28
CLN3-212ENST00000564574 IGHV1-69DA0A0B4J2H0 117 aa16.8■□□□□ 0.28
CLN3-212ENST00000564574 DISC1C4P0D8 188 aa16.8■□□□□ 0.28
CLN3-212ENST00000564574 M0QYG6 137 aa16.8■□□□□ 0.28
CLN3-212ENST00000564574 IGLV1-47P01700 117 aa16.8■□□□□ 0.28
CLN3-212ENST00000564574 IGHV1-69P01742 117 aa16.8■□□□□ 0.28
CLN3-212ENST00000564574 FCGR2CP31995 323 aa16.8■□□□□ 0.28
CLN3-212ENST00000564574 GNG10P50151 68 aa16.8■□□□□ 0.28
CLN3-212ENST00000564574 TSPAN5P62079 268 aa16.8■□□□□ 0.28
CLN3-212ENST00000564574 HLA-DRB5Q30154 266 aa16.8■□□□□ 0.28
CLN3-212ENST00000564574 UTF1Q5T230 341 aa16.8■□□□□ 0.28
CLN3-212ENST00000564574 FAM53AQ6NSI3 398 aaPredicted RBP16.8■□□□□ 0.28
CLN3-212ENST00000564574 OR4C16Q8NGL9 310 aa16.8■□□□□ 0.28
CLN3-212ENST00000564574 OR6F1Q8NGZ6 308 aa16.8■□□□□ 0.28
CLN3-212ENST00000564574 CREB3L1Q96BA8 519 aa16.8■□□□□ 0.28
CLN3-212ENST00000564574 C7orf50Q9BRJ6 194 aaKnown RBP16.8■□□□□ 0.28
CLN3-212ENST00000564574 MMP28Q9H239 520 aa16.8■□□□□ 0.28
CLN3-212ENST00000564574 GHITMQ9H3K2 345 aa16.8■□□□□ 0.28
CLN3-212ENST00000564574 OR2W1Q9Y3N9 320 aa16.8■□□□□ 0.28
CLN3-212ENST00000564574 AMMECR1Q9Y4X0 333 aaPredicted RBP16.8■□□□□ 0.28
CLN3-212ENST00000564574 CSPG4Q6UVK1 2322 aa16.8■□□□□ 0.28
CLN3-212ENST00000564574 UPK1BO75841 260 aa16.79■□□□□ 0.28
CLN3-212ENST00000564574 ARG1P05089 322 aa16.79■□□□□ 0.28
CLN3-212ENST00000564574 NFYAP23511 347 aaPredicted RBP16.79■□□□□ 0.28
CLN3-212ENST00000564574 IL3RAP26951 378 aa16.79■□□□□ 0.28
CLN3-212ENST00000564574 PRB3Q04118 309 aaPredicted RBP16.79■□□□□ 0.28
CLN3-212ENST00000564574 MIDNQ504T8 468 aa16.79■□□□□ 0.28
CLN3-212ENST00000564574 CT45A1Q5HYN5 189 aa16.79■□□□□ 0.28
CLN3-212ENST00000564574 KLF17Q5JT82 389 aaPredicted RBP16.79■□□□□ 0.28
CLN3-212ENST00000564574 FAM120AOSQ5T036 256 aa16.79■□□□□ 0.28
CLN3-212ENST00000564574 ZNF660Q6AZW8 331 aaPredicted RBP16.79■□□□□ 0.28
CLN3-212ENST00000564574 CT45A3Q8NHU0 189 aa16.79■□□□□ 0.28
CLN3-212ENST00000564574 C11orf54Q9H0W9 315 aaPredicted RBP16.79■□□□□ 0.28
CLN3-212ENST00000564574 ABCB10Q9NRK6 738 aa16.79■□□□□ 0.28
CLN3-212ENST00000564574 TBL2Q9Y4P3 447 aaKnown RBP16.79■□□□□ 0.28
CLN3-212ENST00000564574 NAP1L6A6NFF2 107 aa16.78■□□□□ 0.28
CLN3-212ENST00000564574 IGHV3-7P01780 117 aa16.78■□□□□ 0.28
CLN3-212ENST00000564574 AMY2AP04746 511 aa16.78■□□□□ 0.28
CLN3-212ENST00000564574 IGHV4-38-2P0DP08 117 aa16.78■□□□□ 0.28
CLN3-212ENST00000564574 ZNF134P52741 427 aa16.78■□□□□ 0.28
CLN3-212ENST00000564574 LGALS4P56470 323 aa16.78■□□□□ 0.28
CLN3-212ENST00000564574 MINOS1Q5TGZ0 78 aa16.78■□□□□ 0.28
CLN3-212ENST00000564574 PDZD9Q8IXQ8 264 aa16.78■□□□□ 0.28
CLN3-212ENST00000564574 OR4P4Q8NGL7 312 aa16.78■□□□□ 0.28
CLN3-212ENST00000564574 OR10X1Q8NGY0 326 aa16.78■□□□□ 0.28
CLN3-212ENST00000564574 BORCS5Q969J3 196 aa16.78■□□□□ 0.28
CLN3-212ENST00000564574 ZNF2Q9BSG1 426 aaPredicted RBP16.78■□□□□ 0.28
CLN3-212ENST00000564574 HRASLSQ9HDD0 168 aa16.78■□□□□ 0.28
CLN3-212ENST00000564574 NUP50Q9UKX7 468 aa16.78■□□□□ 0.28
CLN3-212ENST00000564574 MINOS1-NBL1R4GNA1 71 aa16.78■□□□□ 0.28
CLN3-212ENST00000564574 A0A1W2PPE3 182 aa16.77■□□□□ 0.28
CLN3-212ENST00000564574 CENPXA8MT69 81 aa16.77■□□□□ 0.28
CLN3-212ENST00000564574 NPFFO15130 113 aa16.77■□□□□ 0.28
CLN3-212ENST00000564574 SLC31A2O15432 143 aa16.77■□□□□ 0.28
CLN3-212ENST00000564574 PPYP01298 95 aa16.77■□□□□ 0.28
CLN3-212ENST00000564574 ZNF735P0CB33 412 aa16.77■□□□□ 0.28
CLN3-212ENST00000564574 AADACP22760 399 aa16.77■□□□□ 0.28
CLN3-212ENST00000564574 HTR1DP28221 377 aa16.77■□□□□ 0.28
CLN3-212ENST00000564574 LUMP51884 338 aaPredicted RBP16.77■□□□□ 0.28
CLN3-212ENST00000564574 HERV-K104P61576 105 aa16.77■□□□□ 0.28
CLN3-212ENST00000564574 OR4D10Q8NGI6 311 aa16.77■□□□□ 0.28
CLN3-212ENST00000564574 SLC6A7Q99884 636 aa16.77■□□□□ 0.28
CLN3-212ENST00000564574 PRRT1Q99946 306 aa16.77■□□□□ 0.28
CLN3-212ENST00000564574 AGMATQ9BSE5 352 aa16.77■□□□□ 0.28
CLN3-212ENST00000564574 PARP12Q9H0J9 701 aaKnown RBP16.77■□□□□ 0.28
CLN3-212ENST00000564574 SLC2A8Q9NY64 477 aa16.77■□□□□ 0.28
CLN3-212ENST00000564574 PIPOXQ9P0Z9 390 aa16.77■□□□□ 0.28
CLN3-212ENST00000564574 RBM7Q9Y580 266 aaKnown RBP16.77■□□□□ 0.28
CLN3-212ENST00000564574 BUB1B-PAK6H3BSN5 160 aa16.76■□□□□ 0.27
CLN3-212ENST00000564574 ST8SIA5O15466 376 aa16.76■□□□□ 0.27
CLN3-212ENST00000564574 SLC22A5O76082 557 aa16.76■□□□□ 0.27
CLN3-212ENST00000564574 CEACAM3P40198 252 aa16.76■□□□□ 0.27
CLN3-212ENST00000564574 OR56B4Q8NH76 319 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms