RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ZNF222Q9UK12 451 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 HIGD1AQ9Y241 93 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 SIGLEC7Q9Y286 467 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 ORC6Q9Y5N6 252 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 UBIAD1Q9Y5Z9 338 aa4.22□□□□□ -1.73
VPS35-205ENST00000563984 AGLP35573 1532 aa4.21□□□□□ -1.73
VPS35-205ENST00000563984 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.21□□□□□ -1.73
VPS35-205ENST00000563984 TRAV18A0A075B6X5 111 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 A0A1B0GV50 99 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 SPAARA0A1B0GVQ0 90 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 FAM231BA6NCW3 169 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 HMSDA8MTL9 139 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 G3V2L1 256 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 H3BMH7 237 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 PPP1R3DO95685 299 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 SOD3P08294 240 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 IGLC1P0CG04 106 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 CSRP1P21291 193 aaKnown RBP4.21□□□□□ -1.74
VPS35-205ENST00000563984 GJB2P29033 226 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 SHC1P29353 583 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 GUCA1AP43080 201 aaPredicted RBP4.21□□□□□ -1.74
VPS35-205ENST00000563984 CXCL12P48061 93 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 C1QTNF8P60827 252 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 LCN6P62502 163 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 RBM39Q14498 530 aaKnown RBP4.21□□□□□ -1.74
VPS35-205ENST00000563984 ATXN7L3Q14CW9 347 aaPredicted RBP4.21□□□□□ -1.74
VPS35-205ENST00000563984 TIMM50Q3ZCQ8 353 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 SLC25A47Q6Q0C1 308 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 HEPN1Q6WQI6 88 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 FOXI2Q6ZQN5 318 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 SLC25A48Q6ZT89 311 aaKnown RBP4.21□□□□□ -1.74
VPS35-205ENST00000563984 VKORC1L1Q8N0U8 176 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 TTC9CQ8N5M4 171 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 STPG4Q8N801 248 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 TMEM178AQ8NBL3 297 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 RELL2Q8NC24 303 aaPredicted RBP4.21□□□□□ -1.74
VPS35-205ENST00000563984 GATAD1Q8WUU5 269 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 SLAMF6Q96DU3 332 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 LINC00477Q96M19 166 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 S1PR3Q99500 378 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 MCHR1Q99705 422 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 ADAT1Q9BUB4 502 aaKnown RBP4.21□□□□□ -1.74
VPS35-205ENST00000563984 SPANXDQ9BXN6 97 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 ULBP3Q9BZM4 244 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 POLR2J3Q9H1A7 115 aaKnown RBP4.21□□□□□ -1.74
VPS35-205ENST00000563984 TMEM133Q9H2Q1 129 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 ZNF442Q9H7R0 627 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 APOBEC3GQ9HC16 384 aaKnown RBP4.21□□□□□ -1.74
VPS35-205ENST00000563984 PRTFDC1Q9NRG1 225 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 SIGLEC8Q9NYZ4 499 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 ZNF319Q9P2F9 582 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 LSM7Q9UK45 103 aaKnown RBP4.21□□□□□ -1.74
VPS35-205ENST00000563984 NTNG1Q9Y2I2 539 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 POLR1DQ9Y2S0 133 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 A2ML1A8K2U0 1454 aa4.21□□□□□ -1.74
VPS35-205ENST00000563984 CEP170BQ9Y4F5 1589 aaPredicted RBP4.21□□□□□ -1.74
VPS35-205ENST00000563984 IGLV5-52A0A0A0MRZ9 124 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 A0A0B4J2A0 478 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 A0A1B0GUV1 79 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 DUXBA0A1W2PPF3 345 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 VCYO14598 125 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 CDC42EP2O14613 210 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 MLNRO43193 412 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 PLPP2O43688 288 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 ZNF354AO60765 605 aaPredicted RBP4.2□□□□□ -1.74
VPS35-205ENST00000563984 CRLF1O75462 422 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 EEDO75530 441 aaKnown RBP4.2□□□□□ -1.74
VPS35-205ENST00000563984 SIX6O95475 246 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 C1orf105O95561 183 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 LSM8O95777 96 aaKnown RBP4.2□□□□□ -1.74
VPS35-205ENST00000563984 CA1P00915 261 aaPredicted RBP4.2□□□□□ -1.74
VPS35-205ENST00000563984 HLA-DQB1P01920 261 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 TTRP02766 147 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 SCTP09683 121 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 SMIM10L2AP0DMW4 78 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 SMIM10L2BP0DMW5 78 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 CD1DP15813 335 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 NFYAP23511 347 aaPredicted RBP4.2□□□□□ -1.74
VPS35-205ENST00000563984 MT3P25713 68 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 CNTFRP26992 372 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 REG1BP48304 166 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 EMDP50402 254 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 SSR4P51571 173 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 TPPP2P59282 170 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 KRTAP10-5P60370 271 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 RPS14P62263 151 aaKnown RBP4.2□□□□□ -1.74
VPS35-205ENST00000563984 SLC35A1P78382 337 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 PSG9Q00887 426 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 AKR1C1Q04828 323 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 MEF2CQ06413 473 aaPredicted RBP4.2□□□□□ -1.74
VPS35-205ENST00000563984 FAM27E3Q08E93 113 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 PSG7Q13046 419 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 MYBPHQ13203 477 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 COA6Q5JTJ3 125 aaKnown RBP4.2□□□□□ -1.74
VPS35-205ENST00000563984 GLYATL3Q5SZD4 288 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 C9orf57Q5W0N0 161 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 RASL11AQ6T310 242 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 PTAR1Q7Z6K3 402 aaPredicted RBP4.2□□□□□ -1.74
VPS35-205ENST00000563984 DEFB132Q7Z7B7 95 aa4.2□□□□□ -1.74
VPS35-205ENST00000563984 OOSP2Q86WS3 158 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms