RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 HLA-DRB1P01911 266 aa13.46□□□□□ -0.25
VPS9D1-203ENST00000563798 PPIFP30405 207 aaKnown RBP13.46□□□□□ -0.25
VPS9D1-203ENST00000563798 PPP1CCP36873 323 aaKnown RBP13.46□□□□□ -0.25
VPS9D1-203ENST00000563798 DGCR2P98153 550 aa13.46□□□□□ -0.25
VPS9D1-203ENST00000563798 FHL3Q13643 280 aa13.46□□□□□ -0.25
VPS9D1-203ENST00000563798 INSL4Q14641 139 aa13.46□□□□□ -0.25
VPS9D1-203ENST00000563798 ZNF880Q6PDB4 577 aa13.46□□□□□ -0.25
VPS9D1-203ENST00000563798 KCNG3Q8TAE7 436 aa13.46□□□□□ -0.25
VPS9D1-203ENST00000563798 C4orf3Q8WVX3 66 aa13.46□□□□□ -0.25
VPS9D1-203ENST00000563798 KCTD7Q96MP8 289 aa13.46□□□□□ -0.25
VPS9D1-203ENST00000563798 NEDD4LQ96PU5 975 aa13.46□□□□□ -0.25
VPS9D1-203ENST00000563798 B9D2Q9BPU9 175 aa13.46□□□□□ -0.25
VPS9D1-203ENST00000563798 SULT4A1Q9BR01 284 aa13.46□□□□□ -0.25
VPS9D1-203ENST00000563798 ZNF107Q9UII5 783 aaPredicted RBP13.46□□□□□ -0.25
VPS9D1-203ENST00000563798 SLC22A1O15245 554 aa13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 NAPSAO96009 420 aa13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 SRMP19623 302 aa13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 ACTBP60709 375 aa13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 QRFPP83859 136 aa13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 GABPB1Q06547 395 aaPredicted RBP13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 SPHARQ15513 63 aa13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 MMDQ15546 238 aa13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 FAM27D1Q5T7N8 215 aa13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 FAM71F2Q6NXP2 309 aa13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 LCNL1Q6ZST4 164 aa13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 C5orf24Q7Z6I8 188 aa13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 NPBQ8NG41 125 aa13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 OR5M8Q8NGP6 311 aa13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 RBMXL1Q96E39 390 aaKnown RBP13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 DUX3Q96PT4 197 aa13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 FAAP24Q9BTP7 215 aa13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 TMEM59Q9BXS4 323 aa13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 VCXQ9H320 206 aa13.45□□□□□ -0.26
VPS9D1-203ENST00000563798 TMEM14DPA8MWL7 114 aa13.44□□□□□ -0.26
VPS9D1-203ENST00000563798 NDUFA3O95167 84 aa13.44□□□□□ -0.26
VPS9D1-203ENST00000563798 UCHL1P09936 223 aa13.44□□□□□ -0.26
VPS9D1-203ENST00000563798 HTR2CP28335 458 aa13.44□□□□□ -0.26
VPS9D1-203ENST00000563798 RUNX1Q01196 453 aa13.44□□□□□ -0.26
VPS9D1-203ENST00000563798 UNC119Q13432 240 aa13.44□□□□□ -0.26
VPS9D1-203ENST00000563798 KIAA0141Q14154 515 aaPredicted RBP13.44□□□□□ -0.26
VPS9D1-203ENST00000563798 IRF3Q14653 427 aa13.44□□□□□ -0.26
VPS9D1-203ENST00000563798 NKAPLQ5M9Q1 402 aa13.44□□□□□ -0.26
VPS9D1-203ENST00000563798 OR10K2Q6IF99 312 aa13.44□□□□□ -0.26
VPS9D1-203ENST00000563798 SVOPQ8N4V2 548 aa13.44□□□□□ -0.26
VPS9D1-203ENST00000563798 RITA1Q96K30 269 aa13.44□□□□□ -0.26
VPS9D1-203ENST00000563798 MRPL20Q9BYC9 149 aaKnown RBP13.44□□□□□ -0.26
VPS9D1-203ENST00000563798 IFI27L2Q9H2X8 130 aa13.44□□□□□ -0.26
VPS9D1-203ENST00000563798 OR51J1Q9H342 316 aa13.44□□□□□ -0.26
VPS9D1-203ENST00000563798 TRBV6-6A0A0A6YYG2 114 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 ITGB1BP1O14713 200 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 NBR2O15453 112 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 BPNT1O95861 308 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 IGLV1-40P01703 118 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 DEFB136Q30KP8 78 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 HSD17B12Q53GQ0 312 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 RBM48Q5RL73 367 aaKnown RBP13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 C9orf66Q5T8R8 295 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 C6orf201Q7Z4U5 140 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 CEACAM19Q7Z692 300 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 OR2AK2Q8NG84 335 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 OR6M1Q8NGM8 313 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 UBE2E2Q96LR5 201 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 ZNF251Q9BRH9 671 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 TMED9Q9BVK6 235 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 GHITMQ9H3K2 345 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 RIMS4Q9H426 269 aaPredicted RBP13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 PIPOXQ9P0Z9 390 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 ABRACLQ9P1F3 81 aa13.43□□□□□ -0.26
VPS9D1-203ENST00000563798 SAA2-SAA4A0A096LPE2 208 aa13.42□□□□□ -0.26
VPS9D1-203ENST00000563798 IGHV7-81A0A0B4J1V7 117 aa13.42□□□□□ -0.26
VPS9D1-203ENST00000563798 SAA2P0DJI9 122 aaPredicted RBP13.42□□□□□ -0.26
VPS9D1-203ENST00000563798 SLC2A2P11168 524 aaPredicted RBP13.42□□□□□ -0.26
VPS9D1-203ENST00000563798 OR3A3P47888 321 aa13.42□□□□□ -0.26
VPS9D1-203ENST00000563798 CRIP2P52943 208 aaPredicted RBP13.42□□□□□ -0.26
VPS9D1-203ENST00000563798 C5orf64Q2M2E5 130 aa13.42□□□□□ -0.26
VPS9D1-203ENST00000563798 C11orf87Q6NUJ2 197 aa13.42□□□□□ -0.26
VPS9D1-203ENST00000563798 MOB1BQ7L9L4 216 aa13.42□□□□□ -0.26
VPS9D1-203ENST00000563798 FAM89BQ8N5H3 189 aa13.42□□□□□ -0.26
VPS9D1-203ENST00000563798 MINDY2Q8NBR6 621 aa13.42□□□□□ -0.26
VPS9D1-203ENST00000563798 ANKRD60Q9BZ19 345 aa13.42□□□□□ -0.26
VPS9D1-203ENST00000563798 SCN3BQ9NY72 215 aa13.42□□□□□ -0.26
VPS9D1-203ENST00000563798 STEAP1Q9UHE8 339 aa13.42□□□□□ -0.26
VPS9D1-203ENST00000563798 A0A0A6YYD4 124 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 PTGES3LE9PB15 166 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 I3L521 148 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 ATP6V0E1O15342 81 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 MYF6P23409 242 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 CNTFRP26992 372 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 BLVRBP30043 206 aaPredicted RBP13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 CD69Q07108 199 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 TPBGQ13641 420 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 C19orf54Q5BKX5 351 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 LIN54Q6MZP7 749 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 ZNF491Q8N8L2 437 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 AGMATQ9BSE5 352 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 NICN1Q9BSH3 213 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 LPAR5Q9H1C0 372 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 KLK15Q9H2R5 256 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 DUSP21Q9H596 190 aa13.41□□□□□ -0.26
VPS9D1-203ENST00000563798 ISYNA1Q9NPH2 558 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms