RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 GPR132Q9UNW8 380 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 DSCAMO60469 2012 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 hADV38S2A0JD32 116 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 NPIPB11E5RHQ5 1161 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 TEX46H3BTG2 121 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 SPINT2O43291 252 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 TUSC2O75896 110 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 PPYP01298 95 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 CGB3P0DN86 165 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 CGB7P0DN87 165 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 RPS2P15880 293 aaKnown RBP9.29□□□□□ -0.92
USP3-218ENST00000560202 AADACP22760 399 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 FPR2P25090 351 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 ECI1P42126 302 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 MEF2CQ06413 473 aaPredicted RBP9.29□□□□□ -0.92
USP3-218ENST00000560202 SURF2Q15527 256 aaPredicted RBP9.29□□□□□ -0.92
USP3-218ENST00000560202 ZNF787Q6DD87 383 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 ZNF841Q6ZN19 808 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 TMED4Q7Z7H5 227 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 ZNF525Q8N782 197 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 RFESDQ8TAC1 157 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 CORO2AQ92828 525 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 MOB3AQ96BX8 217 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 ALX4Q9H161 411 aaPredicted RBP9.29□□□□□ -0.92
USP3-218ENST00000560202 BIN3Q9NQY0 253 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 OR1A1Q9P1Q5 309 aa9.29□□□□□ -0.92
USP3-218ENST00000560202 USP9YO00507 2555 aaPredicted RBP9.28□□□□□ -0.92
USP3-218ENST00000560202 F8W036 122 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 DNASE2O00115 360 aaPredicted RBP9.28□□□□□ -0.92
USP3-218ENST00000560202 HSPA12AO43301 675 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 CREBL2O60519 120 aaPredicted RBP9.28□□□□□ -0.92
USP3-218ENST00000560202 HEXAP06865 529 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 WNT2P09544 360 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 PGAM2P15259 253 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 ZBTB25P24278 435 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 FXYD4P59646 89 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 HERV-K104P61576 105 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 RPL31P62899 125 aaKnown RBP9.28□□□□□ -0.92
USP3-218ENST00000560202 GLDNQ6ZMI3 551 aaPredicted RBP9.28□□□□□ -0.92
USP3-218ENST00000560202 TCF23Q7RTU1 214 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 H1FOOQ8IZA3 346 aaPredicted RBP9.28□□□□□ -0.92
USP3-218ENST00000560202 OR8B3Q8NGG8 313 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 H1FXQ92522 213 aaKnown RBP9.28□□□□□ -0.92
USP3-218ENST00000560202 TOMM40LQ969M1 308 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 NEIL1Q96FI4 390 aaPredicted RBP9.28□□□□□ -0.92
USP3-218ENST00000560202 OR8B2Q96RD0 313 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 FXYD6Q9H0Q3 95 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 C5orf66Q9H5L9 145 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 BARX1Q9HBU1 254 aaPredicted RBP9.28□□□□□ -0.92
USP3-218ENST00000560202 C19orf12Q9NSK7 152 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 CALYQ9NYX4 217 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 ZNF69Q9UC07 566 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 LINC00312Q9Y6C7 94 aa9.28□□□□□ -0.92
USP3-218ENST00000560202 KBTBD11-OT1A0A1B0GTJ5 212 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 PCP4L1A6NKN8 68 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 GPR37O15354 613 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 SNAPINO95295 136 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 ZNF728P0DKX0 622 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 VSIG10L2P0DP72 767 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 FOSL1P15407 271 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 PI3P19957 117 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 CEACAM6P40199 344 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 PDLIM4P50479 330 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 UCP3P55916 312 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 ATP5J2P56134 94 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 KRTAP10-9P60411 292 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 HTD2P86397 168 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 C17orf58Q2M2W7 97 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 LIN54Q6MZP7 749 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 SLC25A42Q86VD7 318 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 OR52L2PQ8NGH6 319 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 RTBDNQ9BSG5 229 aaPredicted RBP9.27□□□□□ -0.93
USP3-218ENST00000560202 PATZ1Q9HBE1 687 aaKnown RBP9.27□□□□□ -0.93
USP3-218ENST00000560202 RAB9BQ9NP90 201 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 OR2S2Q9NQN1 319 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 TAS2R3Q9NYW6 316 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 MBD2Q9UBB5 411 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 MGAT4CQ9UBM8 478 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 LPAR3Q9UBY5 353 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 CLN8Q9UBY8 286 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 UBE2J1Q9Y385 318 aaPredicted RBP9.27□□□□□ -0.93
USP3-218ENST00000560202 OR2W1Q9Y3N9 320 aa9.27□□□□□ -0.93
USP3-218ENST00000560202 TRBV23-1A0A0A0MS06 115 aa9.26□□□□□ -0.93
USP3-218ENST00000560202 ZNF729A6NN14 1252 aaPredicted RBP9.26□□□□□ -0.93
USP3-218ENST00000560202 NUDT19A8MXV4 375 aa9.26□□□□□ -0.93
USP3-218ENST00000560202 F2RL2O00254 374 aa9.26□□□□□ -0.93
USP3-218ENST00000560202 CTSDP07339 412 aaPredicted RBP9.26□□□□□ -0.93
USP3-218ENST00000560202 PAX1P15863 534 aa9.26□□□□□ -0.93
USP3-218ENST00000560202 CXCL2P19875 107 aa9.26□□□□□ -0.93
USP3-218ENST00000560202 UBA52P62987 128 aaKnown RBP9.26□□□□□ -0.93
USP3-218ENST00000560202 WDR25Q64LD2 544 aaPredicted RBP9.26□□□□□ -0.93
USP3-218ENST00000560202 ZNF626Q68DY1 528 aa9.26□□□□□ -0.93
USP3-218ENST00000560202 TMEM200BQ69YZ2 307 aa9.26□□□□□ -0.93
USP3-218ENST00000560202 GSG1LQ6UXU4 331 aa9.26□□□□□ -0.93
USP3-218ENST00000560202 TMUB2Q71RG4 321 aa9.26□□□□□ -0.93
USP3-218ENST00000560202 FAM185AQ8N0U4 392 aa9.26□□□□□ -0.93
USP3-218ENST00000560202 ADAD2Q8NCV1 583 aaKnown RBP9.26□□□□□ -0.93
USP3-218ENST00000560202 NINJ1Q92982 152 aa9.26□□□□□ -0.93
USP3-218ENST00000560202 PHYHIPLQ96FC7 376 aa9.26□□□□□ -0.93
USP3-218ENST00000560202 SEC22CQ9BRL7 303 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms