RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 CPNE9Q8IYJ1 553 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 LYPD1Q8N2G4 141 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 ZNF664Q8N3J9 261 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 ZFAND2AQ8N6M9 145 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 BPIFB6Q8NFQ5 453 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 OR52E4Q8NGH9 312 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 OR10D4PQ8NGN7 298 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 OR10D3Q8NH80 312 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 OR5K1Q8NHB7 308 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 MFSD8Q8NHS3 518 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 ERMNQ8TAM6 284 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 DTD1Q8TEA8 209 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 OR5P3Q8WZ94 311 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 HIST1H2BAQ96A08 127 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 GALMQ96C23 342 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 CMTM5Q96DZ9 223 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 SMIM19Q96E16 107 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 ACY3Q96HD9 319 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 KCTD7Q96MP8 289 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 OR8B2Q96RD0 313 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 PKMYT1Q99640 499 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 EBNA1BP2Q99848 306 aaKnown RBP0.81□□□□□ -2.28
USP3-209ENST00000558925 GNB1LQ9BYB4 327 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 DERL2Q9GZP9 239 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 SLC22A4Q9H015 551 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 HDHD2Q9H0R4 259 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 PARVAQ9NVD7 372 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 UBAP1Q9NZ09 502 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 GLS2Q9UI32 602 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 LINC00527Q9UJ94 153 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 WASHC3Q9Y3C0 194 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 MRPS16Q9Y3D3 137 aaKnown RBP0.81□□□□□ -2.28
USP3-209ENST00000558925 HDGFL3Q9Y3E1 203 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 SSH2Q76I76 1423 aa0.81□□□□□ -2.28
USP3-209ENST00000558925 PCNX2A6NKB5 2137 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 ATAD5Q96QE3 1844 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 IGLV10-54A0A075B6I4 117 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 IGHV3OR15-7A0A075B7D8 119 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 A0A0A6YYH2 397 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 IGKV2-24A0A0C4DH68 120 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 LOC102725191A0A1B0GVB3 256 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 A0A1W2PNM2 257 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 C19orf71A6NCJ1 209 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 SDHAF1A6NFY7 115 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 A6NJ64 397 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 EVPLLA8MZ36 301 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 H0Y980 276 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 H3BSA7 217 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 MRASO14807 208 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 PFDN6O15212 129 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 ZW10O43264 779 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 SLC25A20O43772 301 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 DEDDO75618 318 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 DEXIO95424 95 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 SOD1P00441 154 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 IGLV6-57P01721 117 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 HBZP02008 142 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 RPS12P25398 132 aaKnown RBP0.8□□□□□ -2.28
USP3-209ENST00000558925 CRABP1P29762 137 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 MIPP30301 263 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 MAGEA2P43356 314 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 REG1BP48304 166 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 MYL6P60660 151 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 HERVK_113P63121 156 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 FOXF1Q12946 379 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 BIKQ13323 160 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 ITGB3BPQ13352 177 aaPredicted RBP0.8□□□□□ -2.28
USP3-209ENST00000558925 PPP1R1AQ13522 171 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 JOSD1Q15040 202 aaPredicted RBP0.8□□□□□ -2.28
USP3-209ENST00000558925 PDK2Q15119 407 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 CLEC12BQ2HXU8 276 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 SAPCD1Q5SSQ6 148 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 LCN8Q6JVE9 175 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 LYZL2Q7Z4W2 148 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 FAM19A5Q7Z5A7 132 aaPredicted RBP0.8□□□□□ -2.28
USP3-209ENST00000558925 NIT1Q86X76 327 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 CALHM3Q86XJ0 350 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 C1orf174Q8IYL3 243 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 RPRMLQ8N4K4 120 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 C3orf22Q8N5N4 141 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 LY6G5BQ8NDX9 201 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 CYGBQ8WWM9 190 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 ASB13Q8WXK3 278 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP0.8□□□□□ -2.28
USP3-209ENST00000558925 RAD51AP1Q96B01 352 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 TVP23CQ96ET8 276 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 ABHD14BQ96IU4 210 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 ARL5BQ96KC2 179 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 PACRGQ96M98 296 aaPredicted RBP0.8□□□□□ -2.28
USP3-209ENST00000558925 TM2D3Q9BRN9 247 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 MED18Q9BUE0 208 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 MAP1LC3AQ9H492 121 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 C16orf95Q9H693 158 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 SNX10Q9Y5X0 201 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 ALG5Q9Y673 324 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 ARHGAP32A7KAX9 2087 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 TRPM3Q9HCF6 1732 aaPredicted RBP0.8□□□□□ -2.28
USP3-209ENST00000558925 ADCY9O60503 1353 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 MYO9BQ13459 2157 aa0.8□□□□□ -2.28
USP3-209ENST00000558925 NAV1Q8NEY1 1877 aa0.8□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms